Variant report

Variant	rs6916143
Chromosome Location	chr6:163619906-163619907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163619784..163621705-chr6:163683976..163685917,2	MCF-7	breast:
2	chr6:163619302..163621852-chr6:163683443..163685486,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1022611	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1022612	0.83[EUR][1000 genomes]
rs1122682	0.81[EUR][1000 genomes]
rs11752633	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13197837	0.95[EUR][1000 genomes]
rs13206290	0.95[EUR][1000 genomes]
rs13206740	0.97[EUR][1000 genomes]
rs13217757	0.97[EUR][1000 genomes]
rs13219179	0.95[EUR][1000 genomes]
rs1540922	0.82[EUR][1000 genomes]
rs1970907	0.82[EUR][1000 genomes]
rs4571546	0.82[AMR][1000 genomes]
rs4708981	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5005309	0.86[EUR][1000 genomes]
rs6455871	0.98[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6917118	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6927470	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6935990	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6937505	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6937679	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs763599	0.82[EUR][1000 genomes]
rs9456841	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9458742	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9458743	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9458752	0.97[EUR][1000 genomes]
rs9458753	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2762628	chr6:163572148-163620903	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv275472	chr6:163619906-163623619	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163602600-163622600	Weak transcription	Right Ventricle	heart
2	chr6:163608000-163632800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:163614000-163621200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:163616400-163628800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:163617800-163620400	Weak transcription	Brain Substantia Nigra	brain
6	chr6:163617800-163623800	Weak transcription	Brain Anterior Caudate	brain
7	chr6:163618000-163620400	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:163618800-163620200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:163618800-163620200	Enhancers	Fetal Heart	heart
10	chr6:163619400-163620600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr6:163619400-163620800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:163619400-163620800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:163619800-163620000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:163619800-163621400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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