Variant report

Variant	rs6917941
Chromosome Location	chr6:12296003-12296004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12295166..12297447-chr6:12299179..12301570,2	MCF-7	breast:
2	chr6:12295071..12297145-chr6:12473016..12475414,2	MCF-7	breast:
3	chr6:12290465..12292846-chr6:12293817..12296701,4	MCF-7	breast:
4	chr6:12293675..12296449-chr6:12475977..12478755,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf105-7	chr6:12295926-12296722	NONHSAT107780

Variant related genes	Relation type
ENSG00000078401	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10478735	1.00[EUR][1000 genomes]
rs4714473	1.00[EUR][1000 genomes]
rs56771990	1.00[EUR][1000 genomes]
rs57291999	1.00[EUR][1000 genomes]
rs60330346	1.00[EUR][1000 genomes]
rs6921807	1.00[EUR][1000 genomes]
rs6941575	1.00[EUR][1000 genomes]
rs73367570	1.00[EUR][1000 genomes]
rs7738298	1.00[EUR][1000 genomes]
rs7758081	1.00[EUR][1000 genomes]
rs7758251	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508394	chr6:12285464-12386745	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12290800-12297200	Transcr. at gene 5' and 3'	HUVEC	blood vessel
2	chr6:12291600-12296600	Transcr. at gene 5' and 3'	A549	lung
3	chr6:12292600-12296200	Weak transcription	NHLF	lung
4	chr6:12292800-12296400	Weak transcription	Liver	Liver
5	chr6:12292800-12298000	Weak transcription	Gastric	stomach
6	chr6:12292800-12299200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:12293000-12296200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:12293000-12296200	Weak transcription	Pancreas	Pancrea
9	chr6:12293000-12296400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:12293000-12298000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:12293000-12300000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:12293200-12296200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:12293200-12296200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:12293200-12296200	Weak transcription	Spleen	Spleen
15	chr6:12293200-12296400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:12293200-12297600	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:12293200-12298000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:12293200-12298000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:12293200-12298200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:12293200-12299800	Weak transcription	Left Ventricle	heart
21	chr6:12293400-12296200	Weak transcription	Lung	lung
22	chr6:12293400-12296200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:12293600-12296200	Genic enhancers	Muscle Satellite Cultured Cells	--
24	chr6:12293600-12296400	Genic enhancers	NH-A	brain
25	chr6:12293800-12296200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:12293800-12296200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:12293800-12296200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:12293800-12296200	Genic enhancers	Fetal Intestine Small	intestine
29	chr6:12293800-12296200	Genic enhancers	NHEK	skin
30	chr6:12293800-12296600	Genic enhancers	Rectal Mucosa Donor 31	rectum
31	chr6:12293800-12297200	Genic enhancers	Fetal Intestine Large	intestine
32	chr6:12294000-12296200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:12294200-12296200	Weak transcription	Right Atrium	heart
34	chr6:12294400-12296200	Enhancers	NHDF-Ad	bronchial
35	chr6:12294400-12298000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:12294800-12296200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:12295000-12296200	Weak transcription	HepG2	liver
38	chr6:12295000-12297000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:12295000-12298400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr6:12295200-12296200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:12295200-12296200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:12295200-12296200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:12295200-12296200	Enhancers	Small Intestine	intestine
44	chr6:12295200-12296400	Enhancers	Colon Smooth Muscle	Colon
45	chr6:12295200-12296600	Strong transcription	Fetal Stomach	stomach
46	chr6:12295400-12296200	Genic enhancers	HSMMtube	muscle
47	chr6:12295400-12296200	Enhancers	Osteobl	bone
48	chr6:12295400-12296600	Enhancers	Placenta	Placenta
49	chr6:12295800-12296400	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr6:12295800-12296600	Genic enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links