Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10484536	1.00[EUR][1000 genomes]
rs11962912	1.00[EUR][1000 genomes]
rs11964231	1.00[EUR][1000 genomes]
rs11964407	1.00[EUR][1000 genomes]
rs11969404	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12201606	0.94[EUR][1000 genomes]
rs16887768	1.00[EUR][1000 genomes]
rs1883445	1.00[EUR][1000 genomes]
rs1885214	1.00[EUR][1000 genomes]
rs1885215	1.00[EUR][1000 genomes]
rs1885216	1.00[EUR][1000 genomes]
rs1885217	1.00[EUR][1000 genomes]
rs58008523	1.00[EUR][1000 genomes]
rs61527840	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6456556	1.00[EUR][1000 genomes]
rs6918862	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7739794	1.00[EUR][1000 genomes]
rs7741341	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7741362	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7743934	1.00[EUR][1000 genomes]
rs7745620	1.00[EUR][1000 genomes]
rs7745792	1.00[EUR][1000 genomes]
rs7746217	1.00[EUR][1000 genomes]
rs7763961	1.00[EUR][1000 genomes]
rs7766806	1.00[EUR][1000 genomes]
rs7769279	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9460895	1.00[EUR][1000 genomes]
rs9460896	1.00[EUR][1000 genomes]
rs9460897	1.00[EUR][1000 genomes]
rs9466841	1.00[EUR][1000 genomes]
rs9466842	1.00[EUR][1000 genomes]
rs9466843	1.00[EUR][1000 genomes]
rs9466844	1.00[EUR][1000 genomes]
rs9466845	1.00[EUR][1000 genomes]
rs9466851	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422291	chr6:23466080-23600459	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv830608	chr6:23558655-23644405	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6918282	LBR	trans	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23584800-23587400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:23585000-23587600	Weak transcription	Liver	Liver
3	chr6:23585400-23587400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:23585600-23587400	Weak transcription	Fetal Intestine Large	intestine
5	chr6:23585800-23590000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:23585800-23590000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:23586000-23587600	Weak transcription	HepG2	liver
8	chr6:23587200-23588600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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