Variant report

Variant	rs6919562
Chromosome Location	chr6:37727046-37727047
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12211981	0.81[CEU][hapmap]
rs12213835	0.81[CEU][hapmap]
rs13210701	0.81[CEU][hapmap]
rs259689	0.81[CEU][hapmap]
rs259690	0.81[CEU][hapmap]
rs259691	0.81[CEU][hapmap]
rs259713	0.81[CEU][hapmap]
rs4714105	0.81[ASN][1000 genomes]
rs6458029	0.81[CEU][hapmap]
rs6941057	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9296232	0.81[CEU][hapmap]
rs9394460	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6919562	MDGA1	cis	cerebellum	SCAN
rs6919562	GLO1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37711400-37729400	Weak transcription	Gastric	stomach
2	chr6:37726000-37730600	Enhancers	Placenta	Placenta
3	chr6:37726200-37728400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:37726400-37727800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:37726600-37727200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
6	chr6:37727000-37727600	Flanking Bivalent TSS/Enh	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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