Variant report

Variant	rs6920322
Chromosome Location	chr6:36900684-36900685
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36898801..36900739-chr6:36904348..36905974,2	K562	blood:
2	chr6:36890243..36895519-chr6:36897368..36902270,7	K562	blood:
3	chr6:36899307..36901257-chr6:36904515..36906513,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10456446	0.81[ASN][1000 genomes]
rs1046578	0.91[ASN][1000 genomes]
rs10498736	0.82[ASN][1000 genomes]
rs10947640	0.88[ASN][1000 genomes]
rs10947647	0.88[ASN][1000 genomes]
rs11759850	0.87[ASN][1000 genomes]
rs12110889	0.90[ASN][1000 genomes]
rs12202755	0.80[ASN][1000 genomes]
rs13199306	0.93[ASN][1000 genomes]
rs16889252	0.81[ASN][1000 genomes]
rs2272275	0.88[ASN][1000 genomes]
rs2272276	0.86[ASN][1000 genomes]
rs2280675	0.91[ASN][1000 genomes]
rs2395663	0.85[ASN][1000 genomes]
rs3074	0.91[ASN][1000 genomes]
rs34453243	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36048521	0.81[ASN][1000 genomes]
rs3734331	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3734333	0.91[ASN][1000 genomes]
rs3957238	0.81[ASN][1000 genomes]
rs4475317	0.85[ASN][1000 genomes]
rs4711473	0.87[ASN][1000 genomes]
rs4711474	0.81[ASN][1000 genomes]
rs4714023	0.81[ASN][1000 genomes]
rs59892114	0.88[ASN][1000 genomes]
rs60992755	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61054996	0.80[ASN][1000 genomes]
rs6457964	0.90[ASN][1000 genomes]
rs67854134	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6904504	0.85[ASN][1000 genomes]
rs6918914	0.80[ASN][1000 genomes]
rs6932038	0.85[ASN][1000 genomes]
rs6932175	0.85[ASN][1000 genomes]
rs73420397	0.80[ASN][1000 genomes]
rs7741378	0.86[ASN][1000 genomes]
rs7743646	0.88[ASN][1000 genomes]
rs7743836	0.88[ASN][1000 genomes]
rs7757241	0.82[ASN][1000 genomes]
rs7761653	0.88[ASN][1000 genomes]
rs7770155	0.88[ASN][1000 genomes]
rs7774420	0.88[ASN][1000 genomes]
rs9296200	0.83[ASN][1000 genomes]
rs9462238	0.81[ASN][1000 genomes]
rs9462239	0.84[ASN][1000 genomes]
rs9462240	0.84[ASN][1000 genomes]
rs9462241	0.85[ASN][1000 genomes]
rs9470434	0.90[ASN][1000 genomes]
rs9470439	0.90[ASN][1000 genomes]
rs9969040	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36884800-36901200	Weak transcription	HMEC	breast
2	chr6:36891600-36901800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:36892600-36900800	Weak transcription	NHEK	skin
4	chr6:36892800-36915600	Weak transcription	Pancreas	Pancrea
5	chr6:36893600-36906600	Weak transcription	Thymus	Thymus
6	chr6:36893800-36903800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:36894000-36901200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:36894800-36901000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:36896200-36914200	Weak transcription	Primary T cells from cord blood	blood
10	chr6:36896200-36915400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:36896400-36914200	Weak transcription	Brain Substantia Nigra	brain
12	chr6:36896600-36901400	Weak transcription	Fetal Thymus	thymus
13	chr6:36897000-36903600	Weak transcription	Fetal Stomach	stomach
14	chr6:36897200-36907200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:36898000-36900800	Weak transcription	Osteobl	bone
16	chr6:36898200-36901000	Weak transcription	Adipose Nuclei	Adipose
17	chr6:36898200-36901400	Weak transcription	NH-A	brain
18	chr6:36898200-36902200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:36898400-36900800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:36898400-36901200	Enhancers	Hela-S3	cervix
21	chr6:36898600-36922200	Weak transcription	Right Atrium	heart
22	chr6:36898800-36906200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:36898800-36906400	Weak transcription	Left Ventricle	heart
24	chr6:36899600-36902000	Enhancers	NHDF-Ad	bronchial
25	chr6:36900400-36900800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:36900600-36900800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:36900600-36900800	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr6:36900600-36901000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:36900600-36901400	Enhancers	HUVEC	blood vessel
30	chr6:36900600-36901600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:36900600-36901800	Enhancers	NHLF	lung
32	chr6:36900600-36902000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr6:36900600-36902000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:36900600-36902200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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