Variant report

Variant	rs6920501
Chromosome Location	chr6:140402108-140402109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34040501	1.00[AMR][1000 genomes]
rs9495635	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140394400-140403800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:140399400-140404000	Weak transcription	Fetal Intestine Small	intestine
3	chr6:140400600-140403600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:140400600-140403800	Weak transcription	HMEC	breast
5	chr6:140400600-140404000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:140400600-140404200	Weak transcription	Placenta	Placenta
7	chr6:140400800-140403000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:140400800-140404000	Weak transcription	Aorta	Aorta
9	chr6:140400800-140404000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:140400800-140404000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:140400800-140404200	Weak transcription	Left Ventricle	heart
12	chr6:140401000-140403200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:140401000-140403200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:140401000-140403200	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:140401000-140403800	Weak transcription	Adipose Nuclei	Adipose
16	chr6:140401000-140407200	Weak transcription	Ovary	ovary
17	chr6:140401200-140403600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:140401200-140403800	Weak transcription	Osteobl	bone
19	chr6:140401600-140404000	Weak transcription	NHDF-Ad	bronchial
20	chr6:140401800-140402200	Enhancers	Right Ventricle	heart
21	chr6:140401800-140403000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:140401800-140403200	Weak transcription	Fetal Lung	lung
23	chr6:140401800-140403400	Weak transcription	NHLF	lung
24	chr6:140401800-140403600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:140401800-140404000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links