Variant report

Variant	rs6920739
Chromosome Location	chr6:11272532-11272533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11247018..11249715-chr6:11271698..11273932,2	MCF-7	breast:
2	chr6:11250792..11253562-chr6:11271911..11274737,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10456386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58297187	0.86[ASN][1000 genomes]
rs9468793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11259600-11274600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:11259600-11275800	Weak transcription	Thymus	Thymus
3	chr6:11259600-11277800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:11260800-11276600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:11261400-11272600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:11261400-11272800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:11261400-11275800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:11261400-11276000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:11261600-11275200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:11262800-11272600	Weak transcription	GM12878-XiMat	blood
11	chr6:11264400-11272800	Weak transcription	Adipose Nuclei	Adipose
12	chr6:11264400-11276600	Weak transcription	Spleen	Spleen
13	chr6:11264600-11275000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:11264600-11275200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:11264800-11274600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:11266600-11278800	Enhancers	Fetal Intestine Large	intestine
17	chr6:11268200-11276000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:11269200-11278800	Enhancers	Fetal Intestine Small	intestine
19	chr6:11269200-11281200	Enhancers	Duodenum Mucosa	Duodenum
20	chr6:11269400-11273400	Enhancers	Stomach Mucosa	stomach
21	chr6:11269600-11274200	Enhancers	Fetal Heart	heart
22	chr6:11269800-11274000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:11270000-11273000	Enhancers	Placenta	Placenta
24	chr6:11270000-11273800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:11270000-11273800	Enhancers	Ovary	ovary
26	chr6:11270200-11273400	Enhancers	Fetal Lung	lung
27	chr6:11270200-11276600	Weak transcription	Gastric	stomach
28	chr6:11270400-11272800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:11270600-11273000	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr6:11270600-11274600	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr6:11270800-11273000	Enhancers	Fetal Stomach	stomach
32	chr6:11270800-11273400	Enhancers	NHLF	lung
33	chr6:11270800-11274000	Enhancers	Lung	lung
34	chr6:11270800-11275200	Strong transcription	Primary B cells from cord blood	blood
35	chr6:11271000-11274800	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr6:11271000-11275000	Strong transcription	Primary B cells from peripheral blood	blood
37	chr6:11271000-11275400	Weak transcription	Liver	Liver
38	chr6:11271200-11272800	Weak transcription	Colon Smooth Muscle	Colon
39	chr6:11271200-11272800	Weak transcription	Fetal Kidney	kidney
40	chr6:11271200-11273000	Enhancers	Left Ventricle	heart
41	chr6:11271600-11272600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:11271600-11273000	Enhancers	HSMM	muscle
43	chr6:11271600-11273200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
44	chr6:11271600-11274600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:11271600-11274800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr6:11271800-11272800	Weak transcription	Colonic Mucosa	Colon
47	chr6:11271800-11273000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:11271800-11276600	Weak transcription	Esophagus	oesophagus
49	chr6:11271800-11276600	Weak transcription	Pancreas	Pancrea
50	chr6:11271800-11277400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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