Variant report

Variant	rs6921438
Chromosome Location	chr6:43925607-43925608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11757868	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11757888	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11757903	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12205248	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13206436	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4320361	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4349808	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4349809	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4413611	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4513773	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4637627	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7763440	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7767396	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9472159	0.83[MEX][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9472168	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9472172	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv428480	chr6:43764313-43929172	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6921438	MRPS10	cis	cerebellum	SCAN
rs6921438	SRF	cis	parietal	SCAN
rs6921438	MED20	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:43923400-43932000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:43923800-43926000	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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