Variant report

Variant	rs6921569
Chromosome Location	chr6:74456884-74456885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12524953	0.90[ASN][1000 genomes]
rs12529936	0.88[EUR][1000 genomes]
rs12530058	0.88[ASN][1000 genomes]
rs12530208	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12530219	0.90[ASN][1000 genomes]
rs41265529	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58031803	0.90[ASN][1000 genomes]
rs59054044	0.87[ASN][1000 genomes]
rs6935547	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73458395	0.92[ASN][1000 genomes]
rs9765872	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027968	chr6:74155378-74521923	Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
2	nsv538305	chr6:74155378-74521923	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
3	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
4	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
5	nsv463154	chr6:74412048-74775904	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv603695	chr6:74412048-74775904	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74414800-74474600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:74425200-74475800	Weak transcription	Hela-S3	cervix
3	chr6:74425400-74483200	Weak transcription	A549	lung
4	chr6:74435800-74475400	Weak transcription	Primary T cells from cord blood	blood
5	chr6:74438400-74527200	Weak transcription	Esophagus	oesophagus
6	chr6:74441400-74473200	Weak transcription	HUVEC	blood vessel
7	chr6:74441400-74544400	Weak transcription	Aorta	Aorta
8	chr6:74442200-74473400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:74442400-74493400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:74443400-74484000	Weak transcription	Left Ventricle	heart
11	chr6:74444000-74498600	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:74444400-74474600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:74448800-74483400	Weak transcription	NHEK	skin
14	chr6:74453600-74479400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:74454200-74457400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:74454800-74458400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:74455200-74457200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:74455200-74458200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:74455400-74460000	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:74455800-74457600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:74456000-74457200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:74456000-74461800	Strong transcription	Primary hematopoietic stem cells	blood
23	chr6:74456000-74468400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:74456200-74457000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:74456200-74457000	Enhancers	Osteobl	bone
26	chr6:74456400-74457200	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr6:74456400-74457200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr6:74456400-74457200	Enhancers	Adipose Nuclei	Adipose
29	chr6:74456400-74457600	Enhancers	GM12878-XiMat	blood
30	chr6:74456400-74457600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr6:74456600-74457000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:74456600-74457000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:74456600-74457000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:74456600-74457000	Enhancers	NHDF-Ad	bronchial
35	chr6:74456600-74457200	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr6:74456600-74457200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr6:74456600-74457400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
38	chr6:74456600-74457400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr6:74456600-74457400	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr6:74456600-74457800	Enhancers	Primary B cells from peripheral blood	blood
41	chr6:74456600-74458800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:74456800-74457200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:74456800-74457400	Flanking Active TSS	Primary B cells from cord blood	blood
44	chr6:74456800-74461600	Strong transcription	HMEC	breast
45	chr6:74456800-74483800	Weak transcription	NHLF	lung

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