Variant report
| Variant | rs6922256 |
|---|---|
| Chromosome Location | chr6:26590941-26590942 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:26590700..26592506-chr6:26594678..26597561,2 | MCF-7 | breast: | |
| 2 | chr6:26571551..26574960-chr6:26589936..26592999,3 | MCF-7 | breast: | |
| 3 | chr6:26587627..26591087-chr6:27116064..27118804,3 | K562 | blood: | |
| 4 | chr6:26581396..26586059-chr6:26589997..26593151,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000146109 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs15580 | 0.83[LWK][hapmap] |
| rs2494707 | 0.90[EUR][1000 genomes] |
| rs3736780 | 0.83[LWK][hapmap] |
| rs4713007 | 0.83[LWK][hapmap] |
| rs6911330 | 0.83[LWK][hapmap] |
| rs6929908 | 1.00[LWK][hapmap] |
| rs72844485 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7745632 | 0.83[LWK][hapmap];0.89[ASN][1000 genomes] |
| rs9295697 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948921 | chr6:26556890-27443957 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 472 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:11)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6922256 | RP11-457M11.5 | cis | Adipose Subcutaneous | GTEx |
| rs6922256 | RP11-457M11.5 | cis | Thyroid | GTEx |
| rs6922256 | GUSBP2 | cis | lung | GTEx |
| rs6922256 | RP11-457M11.5 | cis | Artery Tibial | GTEx |
| rs6922256 | RP11-457M11.5 | cis | Artery Aorta | GTEx |
| rs6922256 | RP11-457M11.5 | cis | Whole Blood | GTEx |
| rs6922256 | RP11-457M11.5 | cis | Skin Sun Exposed Lower leg | GTEx |
| rs6922256 | RP11-457M11.5 | cis | Esophagus Mucosa | GTEx |
| rs6922256 | RP11-457M11.5 | cis | lung | GTEx |
| rs6922256 | RP11-457M11.5 | cis | Nerve Tibial | GTEx |
| rs6922256 | RP11-457M11.5 | cis | Muscle Skeletal | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
