Variant report

Variant	rs6922488
Chromosome Location	chr6:121841806-121841807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17083657	1.00[AFR][1000 genomes]
rs17083689	1.00[AMR][1000 genomes]
rs17083745	0.91[AFR][1000 genomes]
rs6900191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6904628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6929653	1.00[AFR][1000 genomes]
rs7759550	0.83[AFR][1000 genomes]
rs7763737	1.00[AFR][1000 genomes]
rs9688473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9688483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9689669	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121830600-121843200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:121832000-121842000	Weak transcription	HMEC	breast
3	chr6:121837600-121842200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:121837600-121843000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:121838200-121844000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:121839000-121843000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:121841000-121842600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:121841000-121845400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:121841200-121842000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:121841200-121842400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:121841200-121842400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:121841200-121842600	Flanking Active TSS	A549	lung
13	chr6:121841200-121845400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:121841400-121842000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:121841400-121842200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:121841400-121842200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:121841400-121842200	Enhancers	Rectal Smooth Muscle	rectum
18	chr6:121841400-121842400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:121841400-121842400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:121841400-121842400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr6:121841400-121842600	Enhancers	H9 Cell Line	embryonic stem cell
22	chr6:121841400-121843000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr6:121841600-121842000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:121841600-121842000	Enhancers	Aorta	Aorta
25	chr6:121841600-121842200	Enhancers	H1 Cell Line	embryonic stem cell
26	chr6:121841600-121842200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:121841600-121842200	Enhancers	Fetal Lung	lung
28	chr6:121841600-121842400	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr6:121841600-121842600	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr6:121841600-121842600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:121841600-121842800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:121841600-121842800	Weak transcription	Ovary	ovary
33	chr6:121841600-121843600	Enhancers	NHDF-Ad	bronchial
34	chr6:121841600-121843800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:121841800-121842000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
36	chr6:121841800-121842000	Enhancers	Fetal Stomach	stomach
37	chr6:121841800-121842000	Enhancers	HSMM	muscle
38	chr6:121841800-121842200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:121841800-121842200	Enhancers	Muscle Satellite Cultured Cells	--
40	chr6:121841800-121842200	Enhancers	HUVEC	blood vessel
41	chr6:121841800-121842400	Enhancers	NH-A	brain
42	chr6:121841800-121842600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:121841800-121843600	Enhancers	Osteobl	bone
44	chr6:121841800-121844200	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links