Variant report

Variant	rs6922632
Chromosome Location	chr6:24107093-24107094
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1343625	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328816	1.00[ASN][1000 genomes]
rs28921123	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55905647	1.00[ASN][1000 genomes]
rs62400306	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400307	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400321	1.00[ASN][1000 genomes]
rs6922290	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6934526	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Information processing speed	21130836	GWAS catalog

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24101000-24126200	Weak transcription	Pancreas	Pancrea
2	chr6:24104200-24109200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:24105800-24108200	Enhancers	Fetal Brain Female	brain
4	chr6:24106000-24108200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:24106400-24107800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:24106400-24109000	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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