Variant report

Variant	rs6923019
Chromosome Location	chr6:66399897-66399898
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1387795	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1387801	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1490124	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1490128	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1490130	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1586656	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2087538	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2130491	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2812761	0.80[EUR][1000 genomes]
rs2812776	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2812777	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2814147	0.80[EUR][1000 genomes]
rs6902244	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6911669	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6915285	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6924750	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6928284	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9283820	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9354275	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs993015	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:54 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886032	chr6:66278575-66622346	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2752484	chr6:66333478-66446679	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757172	chr6:66354388-66453548	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2759435	chr6:66354388-66453548	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2763978	chr6:66370352-66426643	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv5329	chr6:66374218-66436957	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1029949	chr6:66379911-66403840	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1028399	chr6:66389079-66403840	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1020458	chr6:66391779-66508300	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1021934	chr6:66393348-66403840	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1017780	chr6:66393348-66407198	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1024973	chr6:66393348-66503431	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv1825731	chr6:66394090-66404622	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1017533	chr6:66394090-66407198	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1026300	chr6:66394090-66423054	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv436998	chr6:66396683-66404928	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv508411	chr6:66396839-66412827	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv603449	chr6:66396980-66404622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv1832787	chr6:66397163-66404752	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv603450	chr6:66397288-66403726	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv603451	chr6:66397288-66404622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv7910	chr6:66397325-66405946	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv1831074	chr6:66397361-66404661	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3494548	chr6:66397931-66405829	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3494551	chr6:66398381-66405116	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv3494549	chr6:66398381-66405654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv3494550	chr6:66398415-66405116	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv3474558	chr6:66398531-66406629	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv3474559	chr6:66399030-66404694	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv3474560	chr6:66399030-66404694	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv823714	chr6:66399235-66404633	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv1003481	chr6:66399235-66404752	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
33	esv1830834	chr6:66399235-66404752	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
34	esv1833183	chr6:66399235-66404752	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
35	nsv823715	chr6:66399235-66404752	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv823716	chr6:66399235-66404877	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
37	esv1831791	chr6:66399435-66404661	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
38	nsv823717	chr6:66399461-66404752	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
39	esv1831554	chr6:66399470-66403840	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
40	nsv1029615	chr6:66399470-66413811	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
41	nsv1025664	chr6:66399470-66416640	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
42	nsv1025050	chr6:66399470-66417080	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
43	esv2421564	chr6:66399482-66403852	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
44	esv3584534	chr6:66399482-66403852	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
45	esv3584846	chr6:66399482-66403852	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
46	esv3584847	chr6:66399482-66407210	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
47	esv2761015	chr6:66399482-66472665	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
48	esv1830232	chr6:66399525-66403840	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
49	nsv514365	chr6:66399527-66403839	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
50	esv1828341	chr6:66399529-66404661	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:66399600-66400400	Enhancers	Placenta	Placenta

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