Variant report

Variant	rs6923291
Chromosome Location	chr6:15309164-15309165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15307880..15309587-chr6:15317665..15320431,3	K562	blood:
2	chr6:15305494..15307025-chr6:15307899..15310326,2	K562	blood:
3	chr6:15211374..15212897-chr6:15307612..15309960,2	K562	blood:
4	chr6:15264451..15267645-chr6:15306826..15309628,3	K562	blood:
5	chr6:15309030..15310974-chr6:15337189..15339265,2	K562	blood:
6	chr6:15303140..15305494-chr6:15308085..15310163,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12199895	1.00[YRI][hapmap]
rs58674331	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6459405	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902997	0.83[AFR][1000 genomes]
rs6903550	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6907856	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6941561	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15290600-15309400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:15295800-15311400	Enhancers	Primary hematopoietic stem cells	blood
3	chr6:15300200-15312400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:15300400-15312600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:15300800-15310600	Weak transcription	HSMM	muscle
6	chr6:15301200-15312400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:15301200-15313000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr6:15301200-15313400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:15302600-15309800	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr6:15303400-15311400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:15303400-15311400	Enhancers	Primary B cells from peripheral blood	blood
12	chr6:15303800-15310600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:15303800-15312600	Weak transcription	Lung	lung
14	chr6:15304800-15309800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:15305200-15311000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:15305200-15313600	Weak transcription	Liver	Liver
17	chr6:15305400-15312600	Weak transcription	Fetal Brain Male	brain
18	chr6:15305600-15310600	Weak transcription	Gastric	stomach
19	chr6:15305600-15312600	Weak transcription	Fetal Brain Female	brain
20	chr6:15305800-15310000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:15305800-15310000	Weak transcription	Pancreas	Pancrea
22	chr6:15305800-15310600	Weak transcription	Esophagus	oesophagus
23	chr6:15306000-15309400	Enhancers	Fetal Thymus	thymus
24	chr6:15306000-15310200	Weak transcription	Right Atrium	heart
25	chr6:15306000-15311800	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr6:15306000-15318600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:15306200-15310000	Weak transcription	Stomach Mucosa	stomach
28	chr6:15306400-15310000	Weak transcription	Fetal Intestine Large	intestine
29	chr6:15306400-15310600	Weak transcription	Fetal Heart	heart
30	chr6:15306400-15312600	Weak transcription	Spleen	Spleen
31	chr6:15306600-15310000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr6:15306600-15312400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:15306600-15313000	Weak transcription	Fetal Muscle Leg	muscle
34	chr6:15307000-15309800	Weak transcription	Fetal Intestine Small	intestine
35	chr6:15307000-15310000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:15307000-15314800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:15307200-15309600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:15307400-15309200	Enhancers	Psoas Muscle	Psoas
39	chr6:15307400-15309600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:15307400-15309600	Enhancers	Brain Substantia Nigra	brain
41	chr6:15307400-15310200	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr6:15307400-15310200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:15307400-15311000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:15307400-15311000	Enhancers	Brain Anterior Caudate	brain
45	chr6:15307400-15314400	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr6:15307600-15309400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr6:15307600-15309600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:15307600-15309600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:15307600-15309600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:15307600-15309800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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