Variant report

Variant	rs6923648
Chromosome Location	chr6:35648905-35648906
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35630921..35632833-chr6:35646769..35648923,2	K562	blood:
2	chr6:35648425..35651591-chr6:35653901..35657943,7	MCF-7	breast:
3	chr6:35630921..35633784-chr6:35647423..35649794,2	K562	blood:
4	chr6:35636915..35638767-chr6:35648462..35650583,2	K562	blood:
5	chr6:35646147..35649006-chr6:35694213..35696052,2	K562	blood:

Variant related genes	Relation type
ENSG00000096060	Chromatin interaction
ENSG00000265527	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11963207	1.00[YRI][hapmap]
rs11966021	1.00[YRI][hapmap]
rs11969123	1.00[AFR][1000 genomes]
rs7751693	1.00[YRI][hapmap]
rs7769449	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv885801	chr6:35537406-35671651	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv5258	chr6:35601724-35658344	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
7	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv885802	chr6:35621781-35787417	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
9	nsv885803	chr6:35621781-35805133	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
10	nsv885804	chr6:35621781-35809776	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
11	esv1848709	chr6:35626500-35655890	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	8 gene(s)	inside rSNPs	diseases
12	esv1851034	chr6:35626500-35656400	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
13	esv1840748	chr6:35629669-35656400	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
14	nsv428143	chr6:35637083-35806504	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
15	esv3381561	chr6:35648556-35649017	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35631200-35655000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:35631400-35654400	Weak transcription	Aorta	Aorta
3	chr6:35631600-35652000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:35633000-35653600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:35635000-35655000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:35636200-35650800	Weak transcription	Lung	lung
7	chr6:35637600-35654400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:35637800-35653400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:35637800-35654400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:35637800-35655200	Weak transcription	Fetal Stomach	stomach
11	chr6:35638000-35654400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:35638200-35654400	Weak transcription	Primary B cells from cord blood	blood
13	chr6:35641400-35655000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:35641800-35653400	Weak transcription	Esophagus	oesophagus
15	chr6:35642000-35651200	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr6:35642800-35651800	Weak transcription	Brain Substantia Nigra	brain
17	chr6:35643800-35651000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:35644800-35649800	Weak transcription	Brain Hippocampus Middle	brain
19	chr6:35644800-35653000	Weak transcription	Brain Anterior Caudate	brain
20	chr6:35644800-35653800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:35644800-35655200	Weak transcription	Fetal Kidney	kidney
22	chr6:35645000-35653800	Weak transcription	HepG2	liver
23	chr6:35645800-35650400	Weak transcription	Left Ventricle	heart
24	chr6:35645800-35650800	Weak transcription	Pancreas	Pancrea
25	chr6:35645800-35652000	Weak transcription	Psoas Muscle	Psoas
26	chr6:35645800-35654200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:35645800-35655200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:35645800-35655400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:35646000-35649000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr6:35646000-35652000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr6:35646200-35654400	Weak transcription	Hela-S3	cervix
32	chr6:35646400-35654400	Weak transcription	Colon Smooth Muscle	Colon
33	chr6:35646600-35649400	Strong transcription	Fetal Thymus	thymus
34	chr6:35646600-35652200	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr6:35646600-35654400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr6:35646600-35654800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:35646800-35649000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:35646800-35649600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:35646800-35651000	Weak transcription	Brain Cingulate Gyrus	brain
40	chr6:35646800-35653400	Weak transcription	Small Intestine	intestine
41	chr6:35646800-35654400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr6:35646800-35654400	Weak transcription	HSMMtube	muscle
43	chr6:35646800-35654400	Weak transcription	Osteobl	bone
44	chr6:35646800-35655200	Weak transcription	NH-A	brain
45	chr6:35646800-35655400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:35646800-35655400	Weak transcription	Gastric	stomach
47	chr6:35647000-35649200	Weak transcription	GM12878-XiMat	blood
48	chr6:35647000-35649200	Strong transcription	HSMM	muscle
49	chr6:35647000-35651000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:35647000-35653800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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