Variant report

Variant	rs6923655
Chromosome Location	chr6:88253252-88253253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88253112..88256865-chr6:88258252..88260308,4	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16879559	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2300901	0.81[EUR][1000 genomes]
rs2300903	0.81[EUR][1000 genomes]
rs28381470	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28381475	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3819893	0.80[EUR][1000 genomes]
rs4398698	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4615353	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55755139	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55885817	0.80[EUR][1000 genomes]
rs55916435	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56092913	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56386021	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56400749	0.90[AMR][1000 genomes]
rs66464758	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66663658	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66833561	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66937072	0.80[EUR][1000 genomes]
rs67371470	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67956402	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67978476	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68105619	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903825	0.81[EUR][1000 genomes]
rs6907107	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6924641	0.80[EUR][1000 genomes]
rs6933305	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72922526	0.80[EUR][1000 genomes]
rs72922561	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72922577	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73498106	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7752473	0.80[EUR][1000 genomes]
rs7753275	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7769144	0.80[EUR][1000 genomes]
rs8802	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88217800-88295800	Weak transcription	Fetal Brain Male	brain
2	chr6:88227800-88298800	Weak transcription	Esophagus	oesophagus
3	chr6:88228400-88298400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:88228600-88254000	Weak transcription	Gastric	stomach
5	chr6:88228600-88262800	Weak transcription	Small Intestine	intestine
6	chr6:88228600-88271400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:88228600-88285200	Weak transcription	Spleen	Spleen
8	chr6:88228800-88253800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:88228800-88269600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:88229400-88261600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:88229400-88271200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:88229600-88254000	Weak transcription	Brain Anterior Caudate	brain
13	chr6:88229600-88289000	Weak transcription	Lung	lung
14	chr6:88230000-88267000	Weak transcription	Brain Substantia Nigra	brain
15	chr6:88230400-88271200	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:88230600-88254400	Weak transcription	Psoas Muscle	Psoas
17	chr6:88230800-88261600	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:88231200-88262800	Weak transcription	Brain Angular Gyrus	brain
19	chr6:88231200-88264200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:88240000-88253800	Weak transcription	Right Ventricle	heart
21	chr6:88240200-88254000	Weak transcription	Colonic Mucosa	Colon
22	chr6:88240600-88254000	Weak transcription	Fetal Brain Female	brain
23	chr6:88240600-88268200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:88242400-88254000	Weak transcription	NHLF	lung
25	chr6:88244600-88253400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr6:88244800-88254000	Weak transcription	Left Ventricle	heart
27	chr6:88244800-88254400	Weak transcription	Aorta	Aorta
28	chr6:88248000-88255200	Strong transcription	Osteobl	bone
29	chr6:88248800-88255200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:88248800-88257400	Strong transcription	Placenta	Placenta
31	chr6:88249000-88255000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:88249000-88255000	Strong transcription	HSMM	muscle
33	chr6:88249000-88259600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:88249000-88265600	Strong transcription	HepG2	liver
35	chr6:88249400-88263600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:88249600-88254000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr6:88249600-88255200	Strong transcription	Liver	Liver
38	chr6:88249600-88259000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:88249800-88253600	Strong transcription	Fetal Stomach	stomach
40	chr6:88249800-88254400	Weak transcription	Fetal Kidney	kidney
41	chr6:88250000-88275200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:88250400-88256800	Strong transcription	Primary T cells from cord blood	blood
43	chr6:88250400-88262600	Weak transcription	HMEC	breast
44	chr6:88250600-88254000	Weak transcription	Ovary	ovary
45	chr6:88250600-88256000	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr6:88250600-88259000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:88250600-88260000	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr6:88250600-88270800	Weak transcription	Fetal Heart	heart
49	chr6:88250600-88276800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:88250600-88281600	Strong transcription	Monocytes-CD14+_RO01746	blood

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