Variant report

Variant	rs6923748
Chromosome Location	chr6:119800062-119800063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6902137	0.94[AFR][1000 genomes]
rs6911726	1.00[AFR][1000 genomes]
rs6915848	0.94[AFR][1000 genomes]
rs7743150	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv5455	chr6:119794976-119839636	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119797600-119800600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:119797600-119805400	Weak transcription	Spleen	Spleen
3	chr6:119797800-119800800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:119797800-119801200	Weak transcription	Adipose Nuclei	Adipose
5	chr6:119798200-119800600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:119798200-119801000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:119798200-119801000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:119798200-119801400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:119798400-119801200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:119798600-119801000	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:119798800-119801200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:119799800-119800200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:119800000-119803000	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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