Variant report

Variant	rs6923842
Chromosome Location	chr6:5723181-5723182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5721926..5724566-chr6:5725553..5727803,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1009606	1.00[JPT][hapmap]
rs57053744	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6924018	1.00[ASW][hapmap];0.94[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738292	1.00[JPT][hapmap]
rs7747282	0.82[CEU][hapmap]
rs9405868	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5707600-5724000	Weak transcription	Thymus	Thymus
2	chr6:5713800-5723400	Weak transcription	Primary T cells from cord blood	blood
3	chr6:5714600-5723600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:5717400-5729000	Weak transcription	Fetal Stomach	stomach
5	chr6:5717600-5729000	Weak transcription	Fetal Lung	lung
6	chr6:5717600-5729600	Weak transcription	Brain Substantia Nigra	brain
7	chr6:5717800-5723600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:5717800-5725600	Weak transcription	Fetal Intestine Small	intestine
9	chr6:5718000-5729200	Weak transcription	NHEK	skin
10	chr6:5719000-5723800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:5719200-5723400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:5719400-5723200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:5720600-5723400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:5720600-5723600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:5720600-5723600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:5722400-5724000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:5722400-5724600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:5722600-5723600	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr6:5722600-5723800	Enhancers	Primary B cells from peripheral blood	blood
20	chr6:5722800-5723200	Enhancers	Lung	lung
21	chr6:5722800-5723400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:5722800-5723600	Enhancers	Spleen	Spleen
23	chr6:5722800-5723800	Enhancers	Primary B cells from cord blood	blood
24	chr6:5722800-5724800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:5722800-5724800	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr6:5722800-5724800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:5722800-5725000	Enhancers	H1 Cell Line	embryonic stem cell
28	chr6:5722800-5725000	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:5722800-5725000	Enhancers	Placenta	Placenta
30	chr6:5723000-5723400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:5723000-5723800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:5723000-5724000	Enhancers	Primary hematopoietic stem cells	blood
33	chr6:5723000-5724000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr6:5723000-5724200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:5723000-5744200	Weak transcription	Right Ventricle	heart

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