Variant report

Variant	rs6924164
Chromosome Location	chr6:37749384-37749385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37746514..37749861-chr6:37785177..37789437,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225945	Chromatin interaction
ENSG00000156639	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2645119	1.00[AMR][1000 genomes]
rs73417445	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7755480	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37731600-37751000	Weak transcription	Psoas Muscle	Psoas
2	chr6:37740800-37750400	Weak transcription	Fetal Brain Male	brain
3	chr6:37742400-37750800	Weak transcription	Liver	Liver
4	chr6:37744400-37750800	Weak transcription	Right Atrium	heart
5	chr6:37747000-37750800	Weak transcription	HSMMtube	muscle
6	chr6:37747200-37750600	Weak transcription	Fetal Brain Female	brain
7	chr6:37747400-37750800	Weak transcription	Pancreas	Pancrea
8	chr6:37747400-37751000	Weak transcription	HSMM	muscle
9	chr6:37747800-37750800	Weak transcription	NHLF	lung
10	chr6:37747800-37751000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:37748000-37750600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:37748000-37750800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:37748000-37750800	Weak transcription	Brain Germinal Matrix	brain
14	chr6:37748000-37751000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:37748000-37751000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:37748200-37750800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:37748200-37750800	Weak transcription	NHDF-Ad	bronchial
18	chr6:37748400-37750800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:37748600-37750400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:37748600-37750600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:37748600-37750600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:37748600-37750600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:37748600-37750600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:37748600-37750800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:37748600-37750800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:37748600-37750800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:37748600-37750800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:37748600-37750800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:37749200-37750800	Weak transcription	GM12878-XiMat	blood

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