Variant report

Variant	rs6925143
Chromosome Location	chr6:29689254-29689255
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:29689220-29689370	HEEpiC	esophagus:	n/a	n/a
2	MXI1	chr6:29689190-29689274	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29683436..29685775-chr6:29686962..29689399,3	K562	blood:

Variant related genes	Relation type
HLA-F	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6906587	0.83[AMR][1000 genomes]
rs73413053	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv970675	chr6:29657036-29692268	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv428475	chr6:29659525-29763392	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv428139	chr6:29659525-29892317	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv508397	chr6:29663132-29761448	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	esv1821077	chr6:29670915-29726207	Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	esv1794141	chr6:29670915-29765814	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29664000-29690600	Weak transcription	Right Atrium	heart
2	chr6:29688200-29689800	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr6:29688200-29689800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr6:29688200-29690400	Enhancers	Primary T cells fromperipheralblood	blood
5	chr6:29688400-29690200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:29688400-29690200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:29688400-29690200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr6:29688400-29690400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:29688600-29689600	Enhancers	Primary T cells from cord blood	blood
10	chr6:29688600-29689800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr6:29688600-29690800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:29688800-29689400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:29689200-29689400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:29689200-29689400	Enhancers	Right Ventricle	heart
15	chr6:29689200-29689400	Enhancers	Spleen	Spleen
16	chr6:29689200-29689600	Enhancers	GM12878-XiMat	blood
17	chr6:29689200-29690000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr6:29689200-29690000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:29689200-29690400	Enhancers	Primary B cells from peripheral blood	blood
20	chr6:29689200-29690400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:29689200-29690400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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