Variant report

Variant	rs6925193
Chromosome Location	chr6:26475016-26475017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26474445..26476878-chr6:26512542..26515226,3	K562	blood:
2	chr6:26457588..26459634-chr6:26472542..26475354,3	MCF-7	breast:
3	chr6:26472114..26481394-chr6:26482721..26495847,23	K562	blood:
4	chr6:26474221..26477564-chr6:26521186..26523081,3	K562	blood:
5	chr11:62609018..62609547-chr6:26474168..26475039,2	NB4	blood:
6	chr6:26314124..26316500-chr6:26474166..26476547,2	K562	blood:
7	chr6:26474337..26476257-chr6:26519630..26521866,2	MCF-7	breast:
8	chr6:26156628..26158808-chr6:26474596..26476734,2	MCF-7	breast:
9	chr6:26470620..26472220-chr6:26474706..26477657,2	MCF-7	breast:
10	chr6:26342125..26345094-chr6:26474079..26475850,2	K562	blood:
11	chr6:26473312..26475713-chr6:26519494..26521271,2	MCF-7	breast:
12	chr6:26343594..26345212-chr6:26474079..26475915,2	K562	blood:
13	chr6:26474090..26476155-chr6:26476306..26478036,2	MCF-7	breast:
14	chr6:26471319..26475410-chr6:26567164..26571952,5	K562	blood:
15	chr6:26324380..26326185-chr6:26473831..26475753,2	K562	blood:
16	chr6:26472961..26477109-chr6:26519664..26522390,3	K562	blood:
17	chr6:26456009..26458208-chr6:26473841..26475463,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000158373	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000199289	Chromatin interaction
ENSG00000112763	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1535275	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4711112	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456729	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906521	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916321	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7750131	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7765920	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9295696	0.80[EUR][1000 genomes]
rs9357008	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
4	nsv482836	chr6:26352883-26520964	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv482407	chr6:26369320-26550148	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
6	nsv1031938	chr6:26467182-26501897	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26469600-26476600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:26471800-26475400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:26471800-26476400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:26471800-26478000	Weak transcription	Lung	lung
5	chr6:26473200-26475200	Weak transcription	Spleen	Spleen
6	chr6:26473600-26475200	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr6:26473600-26475200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:26473600-26475400	Active TSS	A549	lung
9	chr6:26473600-26475400	Active TSS	HSMMtube	muscle
10	chr6:26473600-26476400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:26473800-26475200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:26473800-26475200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:26473800-26475200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:26473800-26475200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:26473800-26475200	Active TSS	Aorta	Aorta
16	chr6:26473800-26475200	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr6:26473800-26475200	Active TSS	Right Atrium	heart
18	chr6:26473800-26475200	Active TSS	Right Ventricle	heart
19	chr6:26473800-26475400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr6:26473800-26475600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:26474000-26475200	Active TSS	GM12878-XiMat	blood
22	chr6:26474000-26475200	Active TSS	HepG2	liver
23	chr6:26474000-26475400	Active TSS	HSMM	muscle
24	chr6:26474200-26475400	Active TSS	Colonic Mucosa	Colon
25	chr6:26474200-26475800	Flanking Active TSS	K562	blood
26	chr6:26474400-26475600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:26474400-26475800	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr6:26474600-26475200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:26474600-26475200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
30	chr6:26474600-26475200	Flanking Active TSS	Liver	Liver
31	chr6:26474600-26475200	Flanking Active TSS	Brain Anterior Caudate	brain
32	chr6:26474600-26475200	Flanking Active TSS	Fetal Intestine Small	intestine
33	chr6:26474600-26475200	Flanking Active TSS	Fetal Thymus	thymus
34	chr6:26474600-26475200	Flanking Active TSS	HMEC	breast
35	chr6:26474600-26475200	Flanking Active TSS	HUVEC	blood vessel
36	chr6:26474600-26475200	Flanking Active TSS	NHEK	skin
37	chr6:26474600-26475400	Flanking Active TSS	Primary hematopoietic stem cells	blood
38	chr6:26474600-26475400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:26474600-26475400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:26474600-26475400	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr6:26474600-26475600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:26474600-26475600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:26474600-26475600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:26474600-26475600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr6:26474600-26475600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr6:26474600-26475800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:26474600-26475800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr6:26474600-26475800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
49	chr6:26474600-26475800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
50	chr6:26474600-26476000	Enhancers	H9 Cell Line	embryonic stem cell

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