Variant report

Variant	rs6925479
Chromosome Location	chr6:24924700-24924701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56913601	1.00[EUR][1000 genomes]
rs60916187	1.00[EUR][1000 genomes]
rs61426811	1.00[EUR][1000 genomes]
rs73731431	1.00[EUR][1000 genomes]
rs73731435	1.00[EUR][1000 genomes]
rs73731446	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1019504	chr6:24869174-24994758	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24912400-24926600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:24913600-24927400	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr6:24919200-24930600	Weak transcription	Gastric	stomach
4	chr6:24919800-24927600	Enhancers	Fetal Thymus	thymus
5	chr6:24919800-24928600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:24920600-24930000	Weak transcription	Right Atrium	heart
7	chr6:24920600-24932000	Weak transcription	Fetal Kidney	kidney
8	chr6:24921000-24928400	Weak transcription	Fetal Heart	heart
9	chr6:24921200-24926600	Enhancers	Dnd41	blood
10	chr6:24921200-24927800	Weak transcription	HSMMtube	muscle
11	chr6:24921200-24929600	Weak transcription	Psoas Muscle	Psoas
12	chr6:24921400-24926400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:24922800-24925600	Genic enhancers	Primary T cells fromperipheralblood	blood
14	chr6:24923400-24925400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:24923400-24925600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:24923400-24926600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:24923400-24927000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:24923600-24924800	Genic enhancers	GM12878-XiMat	blood
19	chr6:24923600-24925400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:24923800-24924800	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr6:24923800-24925000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr6:24923800-24925600	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
23	chr6:24923800-24926200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:24924000-24925400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:24924000-24925600	Genic enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:24924200-24924800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:24924200-24924800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:24924200-24924800	Transcr. at gene 5' and 3'	Primary T helper naive cells from peripheral blood	blood
29	chr6:24924200-24924800	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
30	chr6:24924200-24925000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:24924200-24925000	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr6:24924200-24925000	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
33	chr6:24924200-24925000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:24924200-24925000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
35	chr6:24924200-24925000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr6:24924200-24925200	Transcr. at gene 5' and 3'	Primary T helper cells fromperipheralblood	blood
37	chr6:24924200-24925400	Enhancers	H1 Cell Line	embryonic stem cell
38	chr6:24924200-24925400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:24924200-24925600	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr6:24924200-24925600	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
41	chr6:24924200-24925800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:24924200-24925800	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
43	chr6:24924200-24927000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
44	chr6:24924400-24924800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
45	chr6:24924400-24924800	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:24924400-24924800	Transcr. at gene 5' and 3'	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:24924400-24925000	Enhancers	H9 Cell Line	embryonic stem cell
48	chr6:24924400-24925600	Enhancers	Thymus	Thymus
49	chr6:24924400-24925800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:24924400-24926800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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