Variant report

Variant	rs6925859
Chromosome Location	chr6:132656564-132656565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132653758..132656591-chr6:132657655..132660147,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11968833	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs1474617	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17637818	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs67649746	0.87[AMR][1000 genomes]
rs6909136	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs73546022	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7740843	1.00[CEU][hapmap];0.80[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7741415	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9321337	0.93[EUR][1000 genomes]
rs9385602	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132640400-132662200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:132644000-132657400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:132644400-132675400	Weak transcription	Fetal Lung	lung
4	chr6:132652000-132665600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:132652800-132657600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:132654600-132656800	Enhancers	Placenta Amnion	Placenta Amnion
7	chr6:132654600-132658400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:132654800-132656800	Enhancers	NHDF-Ad	bronchial
9	chr6:132654800-132657800	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:132655800-132662400	Weak transcription	Fetal Kidney	kidney
11	chr6:132656000-132656600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:132656000-132656600	Enhancers	A549	lung
13	chr6:132656000-132656800	Enhancers	Osteobl	bone
14	chr6:132656000-132665600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:132656000-132676000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:132656200-132656600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:132656200-132656600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:132656200-132656600	Weak transcription	NHEK	skin
19	chr6:132656400-132656800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:132656400-132657400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:132656400-132665600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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