Variant report
Variant | rs6926054 |
---|---|
Chromosome Location | chr6:49643873-49643874 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:6 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:49633492..49635239-chr6:49642582..49645981,3 | MCF-7 | breast: | |
2 | chr6:49633093..49639293-chr6:49639855..49647033,9 | MCF-7 | breast: | |
3 | chr6:49517888..49519831-chr6:49643432..49645516,2 | MCF-7 | breast: | |
4 | chr6:49643415..49646176-chr6:49663937..49665676,2 | MCF-7 | breast: | |
5 | chr6:49602324..49604194-chr6:49642993..49645469,2 | MCF-7 | breast: | |
6 | chr6:49519576..49521829-chr6:49642749..49644290,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000197261 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11757820 | 0.90[JPT][hapmap] |
rs12624 | 0.89[JPT][hapmap] |
rs1570063 | 0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1621948 | 0.88[JPT][hapmap] |
rs17635077 | 0.80[ASN][1000 genomes] |
rs2104029 | 1.00[JPT][hapmap] |
rs2396915 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2396918 | 0.89[JPT][hapmap];0.82[YRI][hapmap] |
rs360563 | 0.89[JPT][hapmap] |
rs6458712 | 1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
rs6914788 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6917380 | 0.83[ASN][1000 genomes] |
rs6922618 | 1.00[JPT][hapmap] |
rs6925452 | 1.00[JPT][hapmap] |
rs7746868 | 0.89[JPT][hapmap];0.82[ASN][1000 genomes] |
rs9369911 | 0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs9381813 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs9381815 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9395521 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs9395522 | 0.90[JPT][hapmap];0.90[YRI][hapmap] |
rs9473636 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1024959 | chr6:49290141-49652124 | Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
2 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
3 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:49637800-49645800 | Weak transcription | K562 | blood |