Variant report

Variant	rs6926063
Chromosome Location	chr6:143246567-143246568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143246172..143248128-chr6:143249871..143252220,3	K562	blood:
2	chr6:143234070..143236358-chr6:143246003..143249254,3	K562	blood:
3	chr6:143246540..143249583-chr6:143265302..143269473,5	MCF-7	breast:
4	chr6:143246172..143247907-chr6:143249446..143252220,3	K562	blood:
5	chr6:143191301..143193311-chr6:143245072..143246705,2	MCF-7	breast:
6	chr6:143243279..143245057-chr6:143245659..143248452,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000010818	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143221600-143247600	Weak transcription	Ovary	ovary
2	chr6:143222000-143247600	Weak transcription	Aorta	Aorta
3	chr6:143222400-143247600	Weak transcription	Fetal Stomach	stomach
4	chr6:143224200-143247400	Weak transcription	Adipose Nuclei	Adipose
5	chr6:143224200-143247600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:143224200-143247600	Weak transcription	Pancreas	Pancrea
7	chr6:143225000-143247600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:143225200-143247200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:143226000-143247000	Weak transcription	NHLF	lung
10	chr6:143226600-143247000	Weak transcription	HMEC	breast
11	chr6:143229000-143247000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:143229000-143247600	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:143229400-143247000	Weak transcription	NHDF-Ad	bronchial
14	chr6:143229400-143247600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:143230200-143247400	Weak transcription	Fetal Intestine Small	intestine
16	chr6:143231200-143247600	Weak transcription	Small Intestine	intestine
17	chr6:143233800-143247800	Weak transcription	Spleen	Spleen
18	chr6:143234400-143247000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:143235000-143246800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:143235000-143247400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:143235200-143247000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:143235400-143247000	Weak transcription	Fetal Thymus	thymus
23	chr6:143235400-143247000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr6:143235400-143247000	Weak transcription	Thymus	Thymus
25	chr6:143235400-143247600	Weak transcription	Fetal Brain Female	brain
26	chr6:143235600-143247400	Weak transcription	Primary B cells from cord blood	blood
27	chr6:143236000-143247000	Weak transcription	Primary B cells from peripheral blood	blood
28	chr6:143236800-143246800	Weak transcription	Brain Angular Gyrus	brain
29	chr6:143237000-143247400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr6:143237800-143247000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:143237800-143247400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:143239800-143247400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:143239800-143247400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:143239800-143247400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:143239800-143247400	Weak transcription	NHEK	skin
36	chr6:143239800-143247600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr6:143239800-143247600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:143239800-143247600	Weak transcription	Left Ventricle	heart
39	chr6:143240400-143247000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr6:143240800-143246600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr6:143241000-143247000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr6:143241600-143247000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr6:143241800-143246800	Weak transcription	Osteobl	bone
44	chr6:143242600-143247000	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr6:143244800-143247400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr6:143245000-143247200	Enhancers	Primary T cells from cord blood	blood
47	chr6:143245200-143246800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr6:143245200-143247400	Weak transcription	GM12878-XiMat	blood
49	chr6:143245200-143247600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:143245400-143246800	Enhancers	Primary T helper cells fromperipheralblood	blood

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