Variant report

Variant	rs6926470
Chromosome Location	chr6:28521570-28521571
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28511955..28518467-chr6:28519043..28523058,10	K562	blood:
2	chr6:28508469..28511332-chr6:28520528..28524271,3	K562	blood:
3	chr6:28519932..28522459-chr6:28575333..28577589,2	K562	blood:
4	chr6:28302151..28303808-chr6:28520859..28523227,2	K562	blood:

Variant related genes	Relation type
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12180700	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12211927	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1319075	0.81[ASN][1000 genomes]
rs1810619	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2213806	0.84[AMR][1000 genomes]
rs2394149	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs370520	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs380914	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs414205	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs420478	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4289643	0.84[ASN][1000 genomes]
rs436827	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs450630	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456825	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6925714	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6926221	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9295772	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9295773	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9348810	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9368568	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9378185	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9380079	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380083	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9393920	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9393921	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9501180	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9885928	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28510800-28521600	Weak transcription	Pancreas	Pancrea
2	chr6:28520600-28522600	Flanking Active TSS	Liver	Liver
3	chr6:28520800-28523000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:28521200-28521800	Bivalent Enhancer	Fetal Kidney	kidney
5	chr6:28521200-28522000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr6:28521200-28522400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:28521200-28522600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr6:28521200-28522600	Flanking Active TSS	K562	blood
9	chr6:28521200-28523200	Flanking Active TSS	HepG2	liver
10	chr6:28521400-28521600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
11	chr6:28521400-28521600	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:28521400-28521600	Bivalent Enhancer	Fetal Brain Female	brain
13	chr6:28521400-28521600	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
14	chr6:28521400-28521600	Flanking Bivalent TSS/Enh	Placenta	Placenta
15	chr6:28521400-28521600	Enhancers	Right Atrium	heart
16	chr6:28521400-28521800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
17	chr6:28521400-28521800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:28521400-28521800	Bivalent Enhancer	Fetal Heart	heart
19	chr6:28521400-28522200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:28521400-28522400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr6:28521400-28522400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
22	chr6:28521400-28522400	Active TSS	H9 Cell Line	embryonic stem cell
23	chr6:28521400-28522400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
24	chr6:28521400-28522400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
25	chr6:28521400-28522400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:28521400-28522400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr6:28521400-28522600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
28	chr6:28521400-28522600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:28521400-28523200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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