Variant report
| Variant | rs6927142 |
|---|---|
| Chromosome Location | chr6:13747064-13747065 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:13747048..13748923-chr6:13762541..13766455,3 | K562 | blood: | |
| 2 | chr6:13740799..13743417-chr6:13745164..13747229,2 | MCF-7 | breast: | |
| 3 | chr6:13711278..13712838-chr6:13745542..13747719,2 | MCF-7 | breast: | |
| 4 | chr6:13743708..13747247-chr6:13762058..13765416,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000010017 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs169461 | 0.93[CHB][hapmap] |
| rs204236 | 0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs204237 | 0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs3752502 | 0.93[CHB][hapmap] |
| rs438942 | 0.81[EUR][1000 genomes] |
| rs442458 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs453337 | 0.81[EUR][1000 genomes] |
| rs9382329 | 0.93[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532021 | chr6:13232627-13805381 | Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 74 gene(s) | inside rSNPs | diseases |
| 2 | nsv1030774 | chr6:13736025-13783733 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
