Variant report

Variant	rs6927271
Chromosome Location	chr6:120049411-120049412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:120048345..120051007-chr6:120058358..120060686,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10484866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872185	0.81[AFR][1000 genomes]
rs11153843	0.89[EUR][1000 genomes]
rs11153846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757432	0.89[EUR][1000 genomes]
rs11757501	0.81[EUR][1000 genomes]
rs11757553	0.81[EUR][1000 genomes]
rs12198857	0.81[EUR][1000 genomes]
rs12202174	0.82[EUR][1000 genomes]
rs12204573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204589	0.81[EUR][1000 genomes]
rs12205746	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207073	0.89[EUR][1000 genomes]
rs12211120	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12211253	0.81[EUR][1000 genomes]
rs12211678	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212825	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12213166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193709	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194523	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13202412	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13208384	0.81[EUR][1000 genomes]
rs13209823	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341497	0.81[EUR][1000 genomes]
rs1417843	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17081512	0.81[EUR][1000 genomes]
rs17174818	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17175669	0.81[EUR][1000 genomes]
rs17254459	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1884252	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1884253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077847	0.81[EUR][1000 genomes]
rs34024607	0.81[EUR][1000 genomes]
rs34663676	0.81[EUR][1000 genomes]
rs4945648	0.82[EUR][1000 genomes]
rs57243130	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914520	0.89[EUR][1000 genomes]
rs6919761	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6922820	0.81[EUR][1000 genomes]
rs727606	0.81[EUR][1000 genomes]
rs731487	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757952	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764925	0.81[EUR][1000 genomes]
rs9285434	0.81[EUR][1000 genomes]
rs9320701	0.81[EUR][1000 genomes]
rs9387674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9481956	0.89[EUR][1000 genomes]
rs9489780	0.81[EUR][1000 genomes]
rs9489782	0.89[EUR][1000 genomes]
rs9489787	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs991356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1027370	chr6:119869409-120056608	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv538431	chr6:119869409-120056608	Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1028580	chr6:120032073-120095538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120048200-120049600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:120048200-120049600	Enhancers	Placenta	Placenta
3	chr6:120048200-120049800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:120048400-120049600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:120048600-120049600	Flanking Active TSS	HepG2	liver
6	chr6:120048600-120049800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:120048600-120049800	Enhancers	K562	blood
8	chr6:120048600-120050400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:120048600-120050400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:120048600-120050600	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:120048800-120049800	Active TSS	Pancreas	Pancrea
12	chr6:120049000-120049600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr6:120049200-120050400	Active TSS	Osteobl	bone
14	chr6:120049400-120049600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:120049400-120049600	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr6:120049400-120050600	Enhancers	Dnd41	blood
17	chr6:120049400-120055200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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