Variant report

Variant	rs6927749
Chromosome Location	chr6:78843339-78843340
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10943520	0.97[EUR][1000 genomes]
rs12192291	0.83[EUR][1000 genomes]
rs12212103	0.82[EUR][1000 genomes]
rs12660571	0.80[ASN][1000 genomes]
rs2026956	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2026957	0.82[EUR][1000 genomes]
rs2095002	0.83[ASN][1000 genomes]
rs2095003	0.83[ASN][1000 genomes]
rs2225493	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2225494	0.82[EUR][1000 genomes]
rs4340965	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4596442	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4706685	0.81[EUR][1000 genomes]
rs4706686	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4706687	0.88[AMR][1000 genomes]
rs56250117	0.81[ASN][1000 genomes]
rs62425412	0.83[AMR][1000 genomes]
rs6927502	0.80[EUR][1000 genomes]
rs6928123	0.82[EUR][1000 genomes]
rs72624507	0.83[ASN][1000 genomes]
rs7775561	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9294097	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9343733	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361377	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016961	chr6:78352231-79003866	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538326	chr6:78352231-79003866	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv949682	chr6:78355600-79002515	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1809182	chr6:78676019-78905264	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv886233	chr6:78754264-78911267	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2758064	chr6:78795880-79193468	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2759447	chr6:78795880-79193468	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2760997	chr6:78836834-79051952	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1024080	chr6:78839526-79003866	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3475138	chr6:78842023-78850043	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	esv3475139	chr6:78842210-78850004	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv3451514	chr6:78842314-78850196	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78842800-78844000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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