Variant report

Variant	rs6927883
Chromosome Location	chr6:12332682-12332683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12292827..12295303-chr6:12330889..12332793,2	MCF-7	breast:
2	chr6:12331038..12333504-chr6:12480063..12482828,2	MCF-7	breast:
3	chr6:12330604..12333158-chr6:12489739..12491762,2	MCF-7	breast:
4	chr6:12330915..12334155-chr6:12334557..12337652,4	MCF-7	breast:
5	chr6:12317622..12319862-chr6:12331456..12333621,2	MCF-7	breast:
6	chr6:12286691..12293887-chr6:12327157..12336724,21	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078401	Chromatin interaction
ENSG00000218893	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10478736	1.00[JPT][hapmap]
rs12110345	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1626492	1.00[CHB][hapmap]
rs16872657	1.00[JPT][hapmap]
rs16872662	1.00[JPT][hapmap]
rs16872679	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16872704	0.82[EUR][1000 genomes]
rs6903351	0.83[EUR][1000 genomes]
rs6912834	1.00[CHB][hapmap]
rs73367561	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7760229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7776339	1.00[JPT][hapmap]
rs9471486	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9471496	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9471517	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508394	chr6:12285464-12386745	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12327400-12334600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:12327800-12337000	Enhancers	HepG2	liver
3	chr6:12328000-12335200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:12328800-12334000	Enhancers	Stomach Mucosa	stomach
5	chr6:12328800-12334800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:12329400-12334600	Weak transcription	Hela-S3	cervix
7	chr6:12329400-12335400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:12329400-12336000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:12329400-12336000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:12331000-12332800	Enhancers	Pancreas	Pancrea
11	chr6:12331000-12333000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:12331000-12333200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr6:12331000-12337200	Enhancers	Fetal Intestine Large	intestine
14	chr6:12331000-12337200	Enhancers	Fetal Intestine Small	intestine
15	chr6:12331400-12332800	Enhancers	Liver	Liver
16	chr6:12331400-12332800	Enhancers	Stomach Smooth Muscle	stomach
17	chr6:12331600-12332800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr6:12331600-12332800	Enhancers	Left Ventricle	heart
19	chr6:12331600-12333000	Enhancers	Placenta	Placenta
20	chr6:12331600-12333600	Enhancers	Duodenum Mucosa	Duodenum
21	chr6:12331800-12333000	Enhancers	Adipose Nuclei	Adipose
22	chr6:12332000-12332800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:12332000-12333800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:12332000-12340200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:12332200-12332800	Enhancers	Lung	lung
26	chr6:12332200-12332800	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr6:12332200-12333000	Enhancers	HUVEC	blood vessel
28	chr6:12332200-12333200	Enhancers	Primary hematopoietic stem cells	blood
29	chr6:12332200-12333400	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr6:12332200-12333400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:12332200-12335000	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr6:12332200-12344000	Weak transcription	Aorta	Aorta
33	chr6:12332400-12332800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
34	chr6:12332400-12335000	Weak transcription	NHEK	skin
35	chr6:12332400-12336000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr6:12332600-12332800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr6:12332600-12332800	Enhancers	Right Atrium	heart
38	chr6:12332600-12333000	Flanking Active TSS	A549	lung
39	chr6:12332600-12333600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr6:12332600-12334800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:12332600-12336400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:12332600-12340400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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