Variant report
| Variant | rs692860 |
|---|---|
| Chromosome Location | chr10:27553672-27553673 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000262412 | Chromatin interaction |
| ENSG00000107897 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10829221 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11015613 | 0.82[ASN][1000 genomes] |
| rs1144508 | 0.93[ASN][1000 genomes] |
| rs1775352 | 0.86[ASN][1000 genomes] |
| rs1819352 | 0.83[ASN][1000 genomes] |
| rs1831186 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1854340 | 0.84[ASN][1000 genomes] |
| rs2026015 | 0.86[ASN][1000 genomes] |
| rs2368221 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2488368 | 0.83[EUR][1000 genomes] |
| rs2488369 | 0.83[EUR][1000 genomes] |
| rs2780666 | 0.86[ASN][1000 genomes] |
| rs2780668 | 0.85[ASN][1000 genomes] |
| rs2780678 | 0.85[ASN][1000 genomes] |
| rs2797077 | 0.90[ASN][1000 genomes] |
| rs2800403 | 0.85[ASN][1000 genomes] |
| rs2800404 | 0.85[ASN][1000 genomes] |
| rs2800406 | 0.85[ASN][1000 genomes] |
| rs576161 | 0.80[EUR][1000 genomes] |
| rs630317 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs693965 | 0.85[EUR][1000 genomes] |
| rs7085905 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422253 | chr10:27431366-27575370 | Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
| 2 | esv3337781 | chr10:27472216-27666703 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
| 3 | nsv8614 | chr10:27504487-27828406 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs692860 | MASTL | cis | Artery Tibial | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
