Variant report

Variant	rs6928657
Chromosome Location	chr6:28780309-28780310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28723977..28727923-chr6:28779903..28783132,3	K562	blood:
2	chr6:28779162..28781130-chr6:28862892..28865549,2	K562	blood:
3	chr6:28692413..28694711-chr6:28778373..28780345,2	K562	blood:

Variant related genes	Relation type
ENSG00000224157	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs13437309	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3118357	0.86[AFR][1000 genomes]
rs3118365	0.83[AFR][1000 genomes]
rs3118366	0.86[AFR][1000 genomes]
rs3118367	0.81[AFR][1000 genomes]
rs3131093	0.83[AFR][1000 genomes]
rs3131094	0.86[AFR][1000 genomes]
rs3131335	0.86[AFR][1000 genomes]
rs3131340	0.90[AFR][1000 genomes]
rs3131343	0.90[AFR][1000 genomes]
rs3131345	0.86[AFR][1000 genomes]
rs3132373	0.90[AFR][1000 genomes]
rs3132376	0.86[AFR][1000 genomes]
rs3132384	0.86[AFR][1000 genomes]
rs3132387	0.81[AFR][1000 genomes]
rs3132391	0.86[AFR][1000 genomes]
rs3132392	0.86[AFR][1000 genomes]
rs3132393	0.86[AFR][1000 genomes]
rs3132394	0.86[AFR][1000 genomes]
rs3132395	0.86[AFR][1000 genomes]
rs3132396	0.90[AFR][1000 genomes]
rs3135294	0.80[AFR][1000 genomes]
rs3135295	0.86[AFR][1000 genomes]
rs3135297	0.81[AFR][1000 genomes]
rs3135300	0.86[AFR][1000 genomes]
rs3135302	0.86[AFR][1000 genomes]
rs3135304	0.83[AFR][1000 genomes]
rs3135306	0.86[AFR][1000 genomes]
rs3135307	0.86[AFR][1000 genomes]
rs4324798	0.90[AFR][1000 genomes]
rs6922228	1.00[AMR][1000 genomes]
rs7745088	0.92[AFR][1000 genomes]
rs7760313	0.81[AFR][1000 genomes]
rs7761321	0.86[AFR][1000 genomes]
rs7764642	0.86[AFR][1000 genomes]
rs7766699	0.93[AFR][1000 genomes]
rs7767099	0.90[AFR][1000 genomes]
rs9257183	0.83[AFR][1000 genomes]
rs9257184	0.83[AFR][1000 genomes]
rs9257187	0.83[AFR][1000 genomes]
rs9257189	0.83[AFR][1000 genomes]
rs9257192	0.83[AFR][1000 genomes]
rs9257217	0.90[AFR][1000 genomes]
rs9257223	0.90[AFR][1000 genomes]
rs9257227	0.81[AFR][1000 genomes]
rs9257245	0.83[AFR][1000 genomes]
rs9257250	0.86[AFR][1000 genomes]
rs9257262	0.86[AFR][1000 genomes]
rs9257267	0.83[AFR][1000 genomes]
rs9257272	0.86[AFR][1000 genomes]
rs9295780	1.00[AMR][1000 genomes]
rs9468444	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2322180	chr6:28764675-28780578	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv9558	chr6:28770281-28785058	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3410540	chr6:28770455-28785112	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3322630	chr6:28770519-28785092	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3486939	chr6:28770525-28785051	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3486940	chr6:28770525-28785051	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	esv3403106	chr6:28770790-28785189	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv970724	chr6:28778144-28784760	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28778200-28781600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:28778800-28780600	Bivalent Enhancer	HepG2	liver
3	chr6:28780000-28780400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
4	chr6:28780000-28780600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:28780000-28781000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
6	chr6:28780000-28781000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr6:28780000-28781200	Enhancers	HMEC	breast
8	chr6:28780000-28781800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:28780000-28782600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:28780200-28780400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr6:28780200-28780400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:28780200-28780600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
13	chr6:28780200-28780600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
14	chr6:28780200-28780600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr6:28780200-28780600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
16	chr6:28780200-28780800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
17	chr6:28780200-28780800	Bivalent Enhancer	NHEK	skin
18	chr6:28780200-28781800	Weak transcription	K562	blood

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