Variant report

Variant	rs6929603
Chromosome Location	chr6:29415652-29415653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11755177	1.00[AFR][1000 genomes]
rs11757272	0.97[AFR][1000 genomes]
rs11961170	1.00[ASN][1000 genomes]
rs16894923	1.00[AFR][1000 genomes]
rs16894930	0.97[AFR][1000 genomes]
rs58774316	1.00[AFR][1000 genomes]
rs58855769	1.00[AFR][1000 genomes]
rs61201055	0.96[AFR][1000 genomes]
rs6911542	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29414200-29416000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:29414200-29418000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:29415000-29415800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:29415200-29416200	Enhancers	HMEC	breast
5	chr6:29415600-29418800	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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