Variant report

Variant	rs692985
Chromosome Location	chr11:59586423-59586424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59576656..59578578-chr11:59586415..59589039,3	K562	blood:

Variant related genes	Relation type
ENSG00000166902	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11230061	0.85[LWK][hapmap];1.00[YRI][hapmap]
rs56122249	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs572072	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61548613	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72931254	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7926513	1.00[YRI][hapmap]
rs7937162	0.86[GIH][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs692985	OR5M9	cis	parietal	SCAN
rs692985	FEN1	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59582000-59588000	Enhancers	Primary hematopoietic stem cells	blood
2	chr11:59582000-59588800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:59584000-59589600	Weak transcription	Ovary	ovary
4	chr11:59584600-59587600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:59585000-59587600	Weak transcription	K562	blood
6	chr11:59585000-59590400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:59585600-59586800	Enhancers	Primary B cells from cord blood	blood
8	chr11:59585600-59587000	Enhancers	Primary T cells from cord blood	blood
9	chr11:59585600-59587600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:59585800-59586800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr11:59585800-59587000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr11:59586000-59586600	Enhancers	GM12878-XiMat	blood
13	chr11:59586000-59586800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:59586000-59586800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr11:59586000-59586800	Enhancers	Primary B cells from peripheral blood	blood
16	chr11:59586000-59586800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:59586000-59586800	Enhancers	Thymus	Thymus
18	chr11:59586000-59586800	Enhancers	HUVEC	blood vessel
19	chr11:59586200-59586600	Enhancers	Primary T cells fromperipheralblood	blood
20	chr11:59586200-59586600	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr11:59586200-59586800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:59586200-59586800	Enhancers	Right Atrium	heart
23	chr11:59586200-59587600	Enhancers	Fetal Thymus	thymus
24	chr11:59586400-59587000	Flanking Active TSS	Dnd41	blood
25	chr11:59586400-59587400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:59586400-59587600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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