Variant report

Variant	rs6930964
Chromosome Location	chr6:37497163-37497164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11755117	0.82[AFR][1000 genomes]
rs11962056	0.80[AFR][1000 genomes]
rs11962097	0.84[AFR][1000 genomes]
rs11962126	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1016310	chr6:37473075-37528469	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6930964	SKINTL	trans	lymphoblastoid	seeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37487600-37498200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:37489400-37502000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:37489600-37502000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:37490800-37502000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:37491000-37503000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:37491200-37498800	Enhancers	Fetal Brain Male	brain
7	chr6:37493800-37514000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:37495200-37503000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:37495600-37497400	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:37495600-37502200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:37495800-37497200	Enhancers	NHEK	skin
12	chr6:37496000-37497200	Enhancers	Fetal Thymus	thymus
13	chr6:37496200-37497200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:37496200-37497200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:37496400-37497400	Enhancers	Primary B cells from cord blood	blood
16	chr6:37496600-37497200	Active TSS	Spleen	Spleen
17	chr6:37496800-37499200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:37496800-37503200	Weak transcription	GM12878-XiMat	blood
19	chr6:37497000-37498000	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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