Variant report

Variant	rs6931318
Chromosome Location	chr6:134275003-134275004
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134274795..134276335-chr6:134385306..134387182,2	MCF-7	breast:
2	chr6:133132887..133135811-chr6:134273188..134277510,5	K562	blood:
3	chr6:134273314..134277341-chr6:134371733..134374606,4	K562	blood:
4	chr6:134274656..134276857-chr6:134311331..134313340,2	K562	blood:

Variant related genes	Relation type
ENSG00000112306	Chromatin interaction
ENSG00000146411	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs60174070	0.92[AFR][1000 genomes]
rs9493765	1.00[AFR][1000 genomes]
rs9493781	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv3387903	chr6:134272809-134276207	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134272400-134275200	Active TSS	Fetal Brain Female	brain
2	chr6:134272400-134275200	Active TSS	Fetal Kidney	kidney
3	chr6:134272400-134275200	Active TSS	Stomach Smooth Muscle	stomach
4	chr6:134272400-134275400	Active TSS	Aorta	Aorta
5	chr6:134272600-134275200	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr6:134272600-134275200	Active TSS	Brain Angular Gyrus	brain
7	chr6:134272600-134275200	Active TSS	Colonic Mucosa	Colon
8	chr6:134272600-134275200	Active TSS	Fetal Intestine Small	intestine
9	chr6:134272600-134275200	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr6:134272600-134275200	Active TSS	Rectal Smooth Muscle	rectum
11	chr6:134272600-134275200	Active TSS	Sigmoid Colon	Sigmoid Colon
12	chr6:134272600-134275200	Active TSS	HMEC	breast
13	chr6:134272600-134275600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:134272600-134275600	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr6:134272600-134275600	Active TSS	Ovary	ovary
16	chr6:134272600-134276200	Active TSS	Right Atrium	heart
17	chr6:134272800-134275200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:134272800-134275200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:134272800-134275200	Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr6:134272800-134275200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:134272800-134275200	Active TSS	Muscle Satellite Cultured Cells	--
22	chr6:134272800-134275200	Active TSS	Brain Hippocampus Middle	brain
23	chr6:134272800-134275200	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr6:134272800-134275200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:134272800-134275200	Active TSS	Duodenum Mucosa	Duodenum
26	chr6:134272800-134275200	Active TSS	Fetal Stomach	stomach
27	chr6:134272800-134275200	Active TSS	Psoas Muscle	Psoas
28	chr6:134272800-134275200	Active TSS	Right Ventricle	heart
29	chr6:134272800-134275200	Active TSS	HSMM	muscle
30	chr6:134272800-134275200	Active TSS	NHDF-Ad	bronchial
31	chr6:134272800-134275200	Active TSS	NHLF	lung
32	chr6:134272800-134275400	Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr6:134272800-134275400	Active TSS	H1 Cell Line	embryonic stem cell
34	chr6:134272800-134275400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:134272800-134275400	Active TSS	Fetal Muscle Trunk	muscle
36	chr6:134272800-134275400	Active TSS	A549	lung
37	chr6:134272800-134275600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:134272800-134275800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:134272800-134275800	Active TSS	GM12878-XiMat	blood
40	chr6:134273000-134275200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:134273000-134275200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:134273000-134275200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:134273000-134275200	Active TSS	H9 Cell Line	embryonic stem cell
44	chr6:134273000-134275200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:134273000-134275200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:134273000-134275200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:134273000-134275200	Active TSS	HUES64 Cell Line	embryonic stem cell
48	chr6:134273000-134275200	Active TSS	iPS-15b Cell Line	embryonic stem cell
49	chr6:134273000-134275200	Active TSS	iPS-20b Cell Line	embryonic stem cell
50	chr6:134273000-134275200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

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