Variant report

Variant	rs6931637
Chromosome Location	chr6:37759061-37759062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:50258702..50259774-chr6:37758614..37759901,5	K562	blood:
2	chr6:37758959..37759891-chr6:37827609..37828644,7	MCF-7	breast:
3	chr6:37758989..37760196-chr6:37827512..37828655,4	MCF-7	breast:
4	chr6:37758926..37760720-chr6:37767100..37768812,2	K562	blood:
5	chr6:37752957..37754928-chr6:37756954..37759189,2	K562	blood:
6	chr6:37758354..37761850-chr6:37786421..37788597,3	K562	blood:
7	chr6:37756866..37759341-chr6:37763585..37765183,2	K562	blood:
8	chr6:37757989..37761183-chr6:37784912..37786796,3	MCF-7	breast:
9	chr6:37758900..37760044-chr6:37980106..37981056,5	MCF-7	breast:
10	chr6:37756505..37762867-chr6:37772774..37778127,6	MCF-7	breast:
11	chr1:114888889..114889767-chr6:37758944..37759480,2	MCF-7	breast:
12	chr6:37709880..37710398-chr6:37758963..37759748,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000225945	Chromatin interaction
ENSG00000156639	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2395690	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37758000-37759600	Enhancers	Fetal Brain Male	brain
2	chr6:37758000-37759800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:37758000-37759800	Enhancers	Liver	Liver
4	chr6:37758200-37759600	Enhancers	Ovary	ovary
5	chr6:37758200-37759800	Enhancers	Pancreas	Pancrea
6	chr6:37758200-37760000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:37758400-37759600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:37758400-37759800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:37758400-37759800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:37758400-37759800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr6:37758400-37759800	Enhancers	Stomach Mucosa	stomach
12	chr6:37758600-37759200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:37758600-37759200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:37758600-37759600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:37758600-37759600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:37758600-37759600	Enhancers	Brain Angular Gyrus	brain
17	chr6:37758600-37759800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:37758600-37759800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:37758600-37759800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:37758600-37759800	Enhancers	Brain Cingulate Gyrus	brain
21	chr6:37758600-37759800	Enhancers	Brain Substantia Nigra	brain
22	chr6:37758600-37759800	Enhancers	Fetal Brain Female	brain
23	chr6:37758600-37759800	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr6:37758600-37759800	Enhancers	HMEC	breast
25	chr6:37758600-37759800	Enhancers	NHEK	skin
26	chr6:37758600-37760000	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr6:37758600-37760000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:37758600-37760000	Enhancers	NHLF	lung
29	chr6:37758600-37760000	Enhancers	Osteobl	bone
30	chr6:37758600-37760600	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr6:37758600-37761400	Enhancers	NHDF-Ad	bronchial
32	chr6:37758600-37762600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:37758800-37759200	Flanking Active TSS	ES-WA7 Cell Line	embryonic stem cell
34	chr6:37758800-37759200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:37758800-37759200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:37758800-37759200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:37758800-37759200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr6:37758800-37759200	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr6:37758800-37759200	Flanking Active TSS	A549	lung
40	chr6:37758800-37759200	Enhancers	GM12878-XiMat	blood
41	chr6:37758800-37759200	Flanking Active TSS	Hela-S3	cervix
42	chr6:37758800-37759200	Flanking Active TSS	HepG2	liver
43	chr6:37758800-37759200	Enhancers	HSMMtube	muscle
44	chr6:37758800-37759200	Enhancers	HUVEC	blood vessel
45	chr6:37758800-37759400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:37758800-37759600	Enhancers	H1 Cell Line	embryonic stem cell
47	chr6:37758800-37759600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:37758800-37759600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr6:37758800-37759600	Enhancers	Colonic Mucosa	Colon
50	chr6:37758800-37759600	Enhancers	Esophagus	oesophagus

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