Variant report

Variant	rs6932176
Chromosome Location	chr6:118374223-118374224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12199949	0.85[AFR][1000 genomes]
rs4245491	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4294040	0.85[AFR][1000 genomes]
rs4549651	0.85[AFR][1000 genomes]
rs4552765	0.85[AFR][1000 genomes]
rs4607461	0.85[AFR][1000 genomes]
rs4945609	0.85[AFR][1000 genomes]
rs6901624	0.85[AFR][1000 genomes]
rs6921661	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7740920	0.85[AFR][1000 genomes]
rs9374699	1.00[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118365800-118375400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118372800-118377800	Weak transcription	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links