Variant report

Variant	rs6932773
Chromosome Location	chr6:149369532-149369533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149368823..149370387-chr6:149804735..149807100,2	K562	blood:

Variant related genes	Relation type
ENSG00000178199	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10457075	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10457839	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499251	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12153925	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197040	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12200909	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202158	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206419	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1316376	0.82[EUR][1000 genomes]
rs13190879	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13217006	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17669546	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890610	0.82[EUR][1000 genomes]
rs1890612	0.82[EUR][1000 genomes]
rs1934221	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1934222	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1934223	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153251	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2153252	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185250	0.82[EUR][1000 genomes]
rs34118116	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34599887	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3949414	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4313020	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4332004	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4336467	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4441968	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4454159	0.81[EUR][1000 genomes]
rs6570923	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570924	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570926	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570927	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570932	0.82[EUR][1000 genomes]
rs6901626	0.84[EUR][1000 genomes]
rs6902195	0.84[EUR][1000 genomes]
rs6902487	0.84[EUR][1000 genomes]
rs6909624	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6914281	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914318	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6914925	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917010	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6924503	0.84[EUR][1000 genomes]
rs6930713	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6940664	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6940915	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7762928	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7773409	0.82[EUR][1000 genomes]
rs9322165	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485353	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498197	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498199	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498201	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498202	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9498204	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9498205	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9498207	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv830842	chr6:149272321-149427340	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149305400-149381400	Weak transcription	Gastric	stomach
2	chr6:149353800-149369800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:149354400-149400600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:149354600-149372000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:149355800-149381600	Weak transcription	Right Atrium	heart
6	chr6:149359200-149372000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:149359200-149380200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:149359200-149380200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:149359200-149381400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:149359200-149381400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:149359200-149381600	Weak transcription	Ovary	ovary
12	chr6:149359200-149383600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:149359400-149379200	Weak transcription	Fetal Lung	lung
14	chr6:149359600-149380200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:149362600-149385200	Weak transcription	Aorta	Aorta
16	chr6:149362800-149372000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:149362800-149401400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:149363000-149380800	Weak transcription	Fetal Stomach	stomach
19	chr6:149363200-149394000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:149365600-149369600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:149365600-149371400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:149366400-149370000	Enhancers	Primary B cells from peripheral blood	blood
23	chr6:149366800-149370800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:149367400-149371800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:149367400-149376000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:149367600-149370800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:149367600-149380200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr6:149368200-149370600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:149368200-149372000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:149368200-149373600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:149368200-149374800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:149368200-149375000	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr6:149368200-149376000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr6:149368200-149380400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:149368200-149380400	Weak transcription	Spleen	Spleen
36	chr6:149368200-149381400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr6:149368200-149381800	Weak transcription	Small Intestine	intestine
38	chr6:149368400-149370000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:149368400-149375000	Weak transcription	Fetal Thymus	thymus
40	chr6:149368600-149369800	Weak transcription	NHEK	skin
41	chr6:149368600-149380400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:149368800-149371600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr6:149368800-149372400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr6:149368800-149375200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:149368800-149376200	Weak transcription	Primary B cells from cord blood	blood
46	chr6:149368800-149377000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr6:149368800-149380200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:149369000-149370000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr6:149369000-149370000	Enhancers	GM12878-XiMat	blood
50	chr6:149369000-149370000	Weak transcription	HSMMtube	muscle

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