Variant report

Variant	rs6933025
Chromosome Location	chr6:117763049-117763050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:117762991-117763605	A549	lung:	n/a	n/a
2	ELF1	chr6:117763019-117763356	HepG2	liver:	n/a	n/a
3	CEBPB	chr6:117763035-117763430	HepG2	liver:	n/a	chr6:117763106-117763118 chr6:117763228-117763239 chr6:117763159-117763172 chr6:117763228-117763241 chr6:117763230-117763241 chr6:117763159-117763170 chr6:117763230-117763241 chr6:117763210-117763221
4	EP300	chr6:117762967-117763459	HepG2	liver:	n/a	chr6:117763160-117763174
5	SP1	chr6:117761688-117763617	A549	lung:	n/a	n/a
6	ARID3A	chr6:117762600-117763464	HepG2	liver:	n/a	chr6:117762840-117762856 chr6:117762841-117762857
7	STAT3	chr6:117763025-117763424	Hela-S3	cervix:	n/a	chr6:117763236-117763244
8	CEBPB	chr6:117762967-117763495	A549	lung:	n/a	chr6:117763106-117763118 chr6:117763228-117763239 chr6:117763159-117763172 chr6:117763228-117763241 chr6:117763230-117763241 chr6:117763159-117763170 chr6:117763230-117763241 chr6:117763210-117763221
9	MAX	chr6:117762948-117763619	A549	lung:	n/a	n/a
10	TCF12	chr6:117761585-117763733	A549	lung:	n/a	n/a
11	TEAD4	chr6:117762935-117763495	A549	lung:	n/a	n/a
12	MBD4	chr6:117762936-117763468	HepG2	liver:	n/a	n/a
13	ETS1	chr6:117763039-117763486	A549	lung:	n/a	n/a
14	TCF12	chr6:117761687-117763150	SK-N-SH	brain:	n/a	n/a
15	FOSL2	chr6:117762997-117763381	A549	lung:	n/a	n/a
16	CEBPB	chr6:117762984-117763479	HepG2	liver:	n/a	chr6:117763106-117763118 chr6:117763228-117763239 chr6:117763159-117763172 chr6:117763228-117763241 chr6:117763230-117763241 chr6:117763159-117763170 chr6:117763230-117763241 chr6:117763210-117763221
17	CEBPB	chr6:117763040-117763372	HepG2	liver:	n/a	chr6:117763106-117763118 chr6:117763228-117763239 chr6:117763159-117763172 chr6:117763228-117763241 chr6:117763230-117763241 chr6:117763159-117763170 chr6:117763230-117763241 chr6:117763210-117763221
18	ELF1	chr6:117762998-117763323	A549	lung:	n/a	n/a
19	GATA3	chr6:117761550-117763737	A549	lung:	n/a	chr6:117762884-117762893
20	CEBPB	chr6:117762958-117763446	HepG2	liver:	n/a	chr6:117763106-117763118 chr6:117763228-117763239 chr6:117763159-117763172 chr6:117763228-117763241 chr6:117763230-117763241 chr6:117763159-117763170 chr6:117763230-117763241 chr6:117763210-117763221
21	EP300	chr6:117761608-117763725	A549	lung:	n/a	chr6:117763160-117763174
22	EP300	chr6:117761674-117763448	Hela-S3	cervix:	n/a	chr6:117763160-117763174
23	MAFF	chr6:117762929-117763493	HepG2	liver:	n/a	n/a
24	FOXA2	chr6:117762904-117763481	A549	lung:	n/a	chr6:117763260-117763272
25	FOXA1	chr6:117762979-117763486	HepG2	liver:	n/a	chr6:117763260-117763272
26	CEBPB	chr6:117762939-117763471	A549	lung:	n/a	chr6:117763106-117763118 chr6:117763228-117763239 chr6:117763159-117763172 chr6:117763228-117763241 chr6:117763230-117763241 chr6:117763159-117763170 chr6:117763230-117763241 chr6:117763210-117763221
27	RCOR1	chr6:117763036-117763407	Hela-S3	cervix:	n/a	n/a
28	JUND	chr6:117763005-117763478	A549	lung:	n/a	n/a
29	USF1	chr6:117763048-117763370	A549	lung:	n/a	n/a
30	MAX	chr6:117762988-117763622	HepG2	liver:	n/a	n/a
31	CEBPB	chr6:117762954-117763447	MCF-7	breast:	n/a	chr6:117763106-117763118 chr6:117763228-117763239 chr6:117763159-117763172 chr6:117763228-117763241 chr6:117763230-117763241 chr6:117763159-117763170 chr6:117763230-117763241 chr6:117763210-117763221
32	MYC	chr6:117763011-117763249	NB4	blood:	n/a	n/a
33	TEAD4	chr6:117762724-117763562	HepG2	liver:	n/a	n/a
34	NFIC	chr6:117762940-117763439	HepG2	liver:	n/a	n/a
35	FOXA1	chr6:117762824-117763571	HepG2	liver:	n/a	chr6:117763260-117763272
36	STAT3	chr6:117762999-117763457	MCF10A-Er-Src	breast:	n/a	chr6:117763236-117763244
37	CEBPB	chr6:117762972-117763416	IMR90	lung:	n/a	chr6:117763106-117763118 chr6:117763228-117763239 chr6:117763159-117763172 chr6:117763228-117763241 chr6:117763230-117763241 chr6:117763159-117763170 chr6:117763230-117763241 chr6:117763210-117763221
38	FOXA2	chr6:117762946-117763466	HepG2	liver:	n/a	chr6:117763260-117763272
39	HDAC2	chr6:117762943-117763536	HepG2	liver:	n/a	chr6:117763263-117763272
40	MYC	chr6:117762958-117763875	MCF10A-Er-Src	breast:	n/a	n/a
41	NFIC	chr6:117761933-117763533	SK-N-SH	brain:	n/a	n/a
42	NR3C1	chr6:117762999-117763475	A549	lung:	n/a	n/a
43	TCF12	chr6:117762893-117763421	A549	lung:	n/a	n/a
44	MAX	chr6:117763022-117763386	Hela-S3	cervix:	n/a	n/a
45	MAFK	chr6:117761938-117763414	Hela-S3	cervix:	n/a	chr6:117762953-117762964 chr6:117763232-117763247
46	BCL3	chr6:117762893-117763472	A549	lung:	n/a	n/a
47	MAFK	chr6:117762978-117763537	HepG2	liver:	n/a	chr6:117763232-117763247
48	MAFK	chr6:117762893-117763471	HepG2	liver:	n/a	chr6:117762953-117762964 chr6:117763232-117763247
49	SMC3	chr6:117763019-117763426	HepG2	liver:	n/a	n/a
50	TCF7L2	chr6:117762835-117763480	HepG2	liver:	n/a	chr6:117763198-117763207

Variant related genes	Relation type
ENSG00000221434	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12183926	1.00[AMR][1000 genomes]
rs12717173	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41444649	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41482448	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41528247	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940610	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73552914	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7744450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9489214	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9489216	1.00[AMR][1000 genomes]
rs9688613	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv966655	chr6:117758375-117766294	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117761200-117763400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:117761600-117763800	Enhancers	NHEK	skin
3	chr6:117761800-117763400	Enhancers	NHDF-Ad	bronchial
4	chr6:117761800-117763600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:117762000-117763400	Enhancers	NH-A	brain
6	chr6:117762000-117763400	Enhancers	NHLF	lung
7	chr6:117762000-117763800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:117762000-117764600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:117762000-117767800	Enhancers	Osteobl	bone
10	chr6:117762200-117763400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:117762200-117763400	Enhancers	HSMMtube	muscle
12	chr6:117762400-117764400	Enhancers	Hela-S3	cervix
13	chr6:117762600-117763200	Flanking Active TSS	HMEC	breast
14	chr6:117762600-117763600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:117762600-117763600	Active TSS	A549	lung
16	chr6:117762600-117763800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:117762600-117764200	Enhancers	HepG2	liver
18	chr6:117762800-117763400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr6:117762800-117763800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:117762800-117764200	Enhancers	HSMM	muscle
21	chr6:117762800-117765800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:117763000-117772200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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