Variant report

Variant	rs6933456
Chromosome Location	chr6:143059354-143059355
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6934777	1.00[AFR][1000 genomes]
rs6935887	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830828	chr6:142970134-143116517	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv981317	chr6:143058282-143069615	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143049800-143073200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:143050000-143061600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:143054200-143072800	Weak transcription	Primary T cells from cord blood	blood
4	chr6:143058200-143059400	Enhancers	NHEK	skin
5	chr6:143058400-143059400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:143058600-143059400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:143058600-143059400	Enhancers	NHDF-Ad	bronchial
8	chr6:143058600-143059600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:143058600-143059600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:143058600-143059800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:143058800-143059400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:143058800-143059400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:143058800-143059600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:143059000-143059400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:143059000-143059400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr6:143059000-143059400	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr6:143059000-143059400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:143059000-143059400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:143059000-143059800	Weak transcription	Adipose Nuclei	Adipose
20	chr6:143059200-143059600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:143059200-143059600	Enhancers	Primary monocytes fromperipheralblood	blood

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