Variant report

Variant	rs6933902
Chromosome Location	chr6:5730686-5730687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17141194	0.83[YRI][hapmap]
rs6919611	1.00[ASW][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522675	chr6:5726231-5732820	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv523810	chr6:5727250-5732797	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv522836	chr6:5727250-5737122	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv969346	chr6:5728002-5734633	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5723000-5744200	Weak transcription	Right Ventricle	heart
2	chr6:5725000-5731600	Weak transcription	Colonic Mucosa	Colon
3	chr6:5725000-5737000	Weak transcription	Primary T cells from cord blood	blood
4	chr6:5725200-5749200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:5726000-5749400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:5727000-5762400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:5727200-5731400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:5728000-5730800	Enhancers	Brain Germinal Matrix	brain
9	chr6:5728400-5731400	Weak transcription	Fetal Thymus	thymus
10	chr6:5728600-5731400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:5729000-5731200	Enhancers	Fetal Lung	lung
12	chr6:5729400-5731200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:5729600-5730800	Enhancers	Brain Substantia Nigra	brain
14	chr6:5729600-5731000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:5729600-5731000	Weak transcription	Spleen	Spleen
16	chr6:5729600-5732800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:5729600-5744800	Weak transcription	Esophagus	oesophagus
18	chr6:5729800-5730800	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr6:5729800-5730800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:5729800-5730800	Weak transcription	HMEC	breast
21	chr6:5729800-5731000	Weak transcription	Fetal Brain Male	brain
22	chr6:5729800-5732400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:5729800-5736400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:5729800-5736400	Weak transcription	Lung	lung
25	chr6:5729800-5739800	Weak transcription	Primary B cells from cord blood	blood
26	chr6:5729800-5744200	Weak transcription	Left Ventricle	heart
27	chr6:5730000-5730800	Enhancers	Fetal Stomach	stomach
28	chr6:5730000-5743000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr6:5730200-5731200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr6:5730200-5731600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:5730400-5730800	Enhancers	Fetal Kidney	kidney
32	chr6:5730400-5731200	Enhancers	Osteobl	bone
33	chr6:5730400-5731400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:5730400-5731600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr6:5730600-5731000	Weak transcription	Fetal Heart	heart

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