Variant report

Variant	rs6934065
Chromosome Location	chr6:53635549-53635550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs3813848	1.00[GIH][hapmap]
rs3813850	1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]
rs59378492	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60295192	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918851	0.83[AFR][1000 genomes]
rs6933533	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9463998	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1021506	chr6:53600338-53770482	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53601600-53638000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:53618800-53635800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:53632000-53636000	Weak transcription	Aorta	Aorta
4	chr6:53632000-53639600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:53632200-53639000	Weak transcription	Gastric	stomach
6	chr6:53633600-53636800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:53633600-53636800	Weak transcription	HSMMtube	muscle
8	chr6:53634400-53636800	Enhancers	Fetal Intestine Small	intestine
9	chr6:53634600-53637400	Enhancers	NHEK	skin
10	chr6:53634800-53637600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:53634800-53638200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:53635200-53635600	Weak transcription	Fetal Intestine Large	intestine
13	chr6:53635200-53636200	Enhancers	Duodenum Mucosa	Duodenum
14	chr6:53635400-53635800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:53635400-53636000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr6:53635400-53636200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:53635400-53636600	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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