Variant report

Variant	rs6935542
Chromosome Location	chr6:166897732-166897733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166892327..166894616-chr6:166897228..166898880,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6923046	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6929010	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7761596	0.91[AMR][1000 genomes]
rs9295350	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9295351	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9347129	1.00[ASW][hapmap];0.91[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348141	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886937	chr6:166830696-166922813	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886938	chr6:166859725-166904398	Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv886939	chr6:166859725-166922813	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv981091	chr6:166892623-166901005	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
2	chr6:166824000-166901400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:166862400-166900600	Weak transcription	Primary T cells from cord blood	blood
4	chr6:166862400-166920600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:166863600-166900200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:166863600-166902000	Weak transcription	Small Intestine	intestine
7	chr6:166864800-166899800	Weak transcription	Esophagus	oesophagus
8	chr6:166867600-166900000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:166870400-166898400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:166871000-166901400	Weak transcription	Stomach Mucosa	stomach
11	chr6:166872000-166900400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:166872200-166900400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:166873000-166902800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:166874800-166903000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:166875000-166900800	Weak transcription	Fetal Heart	heart
16	chr6:166876000-166901400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:166877200-166904400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:166877200-166908800	Weak transcription	Colonic Mucosa	Colon
19	chr6:166878200-166902000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:166879000-166900600	Weak transcription	Primary B cells from cord blood	blood
21	chr6:166880200-166900000	Weak transcription	Fetal Intestine Large	intestine
22	chr6:166880400-166900000	Weak transcription	Fetal Lung	lung
23	chr6:166880600-166899800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:166880800-166904400	Weak transcription	NH-A	brain
25	chr6:166881400-166904400	Weak transcription	Fetal Kidney	kidney
26	chr6:166883400-166898000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:166883400-166901400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:166883600-166898800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:166883800-166898800	Weak transcription	Fetal Intestine Small	intestine
30	chr6:166883800-166900400	Weak transcription	HUVEC	blood vessel
31	chr6:166884600-166911400	Weak transcription	HMEC	breast
32	chr6:166886600-166901400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr6:166888200-166904400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:166888400-166900200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:166889000-166899800	Weak transcription	Thymus	Thymus
36	chr6:166890600-166925200	Weak transcription	Colon Smooth Muscle	Colon
37	chr6:166891400-166904800	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr6:166892600-166910600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr6:166893000-166899200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:166893000-166923200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:166893200-166898600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:166893200-166899000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:166893200-166902600	Weak transcription	Aorta	Aorta
44	chr6:166893600-166898600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:166893600-166898800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:166893600-166921400	Weak transcription	Fetal Brain Male	brain
47	chr6:166893800-166897800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:166894000-166898400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:166894800-166897800	Strong transcription	Stomach Smooth Muscle	stomach
50	chr6:166894800-166898600	Strong transcription	Fetal Stomach	stomach

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