Variant report

Variant	rs6935615
Chromosome Location	chr6:16729124-16729125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:16726943..16729531-chr6:16735403..16736917,2	K562	blood:
2	chr6:16728199..16732841-chr6:16759109..16762967,4	MCF-7	breast:
3	chr6:16715050..16716951-chr6:16726410..16729237,2	K562	blood:

Variant related genes	Relation type
ENSG00000229931	Chromatin interaction
ENSG00000124788	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6459484	0.90[AFR][1000 genomes]
rs6915772	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532022	chr6:16448152-16825567	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031423	chr6:16467215-16823725	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16706200-16730600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:16706400-16742600	Weak transcription	Pancreas	Pancrea
3	chr6:16713200-16731400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:16713800-16731200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:16713800-16747800	Weak transcription	Brain Germinal Matrix	brain
6	chr6:16719000-16731400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:16719200-16736800	Weak transcription	Fetal Brain Female	brain
8	chr6:16720200-16747800	Weak transcription	Fetal Brain Male	brain
9	chr6:16720400-16731000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:16721400-16731200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:16721800-16732800	Enhancers	Fetal Intestine Large	intestine
12	chr6:16722600-16736800	Weak transcription	Right Ventricle	heart
13	chr6:16722600-16739600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:16723800-16732400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:16724200-16732600	Enhancers	Stomach Mucosa	stomach
16	chr6:16724800-16731400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:16724800-16739800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:16725200-16729600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr6:16725200-16731200	Weak transcription	Primary T cells from cord blood	blood
20	chr6:16725600-16729600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr6:16725600-16730000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:16725600-16736800	Weak transcription	Aorta	Aorta
23	chr6:16726000-16729600	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr6:16726000-16730400	Enhancers	NHDF-Ad	bronchial
25	chr6:16726200-16729200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr6:16726200-16729400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:16726200-16729400	Weak transcription	Fetal Kidney	kidney
28	chr6:16726200-16729600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr6:16726200-16729600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:16726200-16730000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:16726200-16730200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:16726200-16739800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:16726400-16729200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:16726400-16729200	Enhancers	Osteobl	bone
35	chr6:16726400-16731200	Weak transcription	Brain Anterior Caudate	brain
36	chr6:16726600-16729400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:16726600-16731000	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:16726600-16739600	Weak transcription	Ovary	ovary
39	chr6:16726800-16731000	Weak transcription	Small Intestine	intestine
40	chr6:16727000-16731000	Weak transcription	Placenta	Placenta
41	chr6:16727000-16731200	Weak transcription	Psoas Muscle	Psoas
42	chr6:16727200-16729200	Weak transcription	HSMM	muscle
43	chr6:16727200-16730800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr6:16727200-16731400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr6:16727200-16731800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:16727200-16737000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:16727400-16729400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:16727400-16731000	Weak transcription	Fetal Lung	lung
49	chr6:16727400-16737000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:16727600-16729200	Weak transcription	HUVEC	blood vessel

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