Variant report

Variant	rs6935807
Chromosome Location	chr6:38200138-38200139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs7745176	0.85[ASN][1000 genomes]
rs7755820	0.85[ASN][1000 genomes]
rs7756174	0.85[ASN][1000 genomes]
rs7756345	0.85[ASN][1000 genomes]
rs7756480	0.85[ASN][1000 genomes]
rs915161	0.82[ASN][1000 genomes]
rs926564	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9349061	0.84[ASN][1000 genomes]
rs9349062	0.84[ASN][1000 genomes]
rs9349063	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv522522	chr6:38131442-38207636	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv520053	chr6:38154941-38207636	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38160800-38201400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:38167000-38210400	Weak transcription	Primary T cells from cord blood	blood
3	chr6:38178000-38221600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:38178000-38221800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:38181000-38207600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:38181400-38202600	Weak transcription	Fetal Stomach	stomach
7	chr6:38181400-38229400	Weak transcription	Fetal Intestine Small	intestine
8	chr6:38184200-38202800	Weak transcription	Psoas Muscle	Psoas
9	chr6:38186600-38215200	Weak transcription	Aorta	Aorta
10	chr6:38188000-38201200	Weak transcription	Spleen	Spleen
11	chr6:38194200-38200600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:38194200-38200600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:38194400-38200600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:38194400-38230200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:38194600-38200600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:38195000-38200600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:38195600-38203200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:38195800-38204400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:38197800-38200600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:38198000-38204600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:38199400-38200600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:38199400-38201000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr6:38199800-38203200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:38200000-38201200	Weak transcription	Gastric	stomach
25	chr6:38200000-38207600	Weak transcription	Lung	lung

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