Variant report

Variant	rs6936111
Chromosome Location	chr6:24215251-24215252
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1520967	1.00[EUR][1000 genomes]
rs16888692	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4636011	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55658260	1.00[EUR][1000 genomes]
rs57615128	1.00[EUR][1000 genomes]
rs7749857	1.00[EUR][1000 genomes]
rs7757601	1.00[CEU][hapmap]
rs793656	1.00[CEU][hapmap]
rs9467136	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv601146	chr6:24166233-24215665	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24199400-24224600	Weak transcription	Pancreas	Pancrea
2	chr6:24206200-24231400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:24206800-24227600	Weak transcription	Fetal Kidney	kidney
4	chr6:24210400-24215400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:24214600-24235400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:24214800-24216800	Strong transcription	HepG2	liver
7	chr6:24215000-24215800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:24215000-24215800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:24215000-24215800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:24215000-24215800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:24215000-24216000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:24215000-24216000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:24215200-24215800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:24215200-24216200	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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