Variant report

Variant	rs6936503
Chromosome Location	chr6:71210226-71210227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11755608	0.81[ASN][1000 genomes]
rs17634863	0.81[ASN][1000 genomes]
rs72917941	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv886144	chr6:71018467-71214201	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv886145	chr6:71119524-71317480	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71134000-71213400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:71136800-71213600	Weak transcription	Brain Substantia Nigra	brain
3	chr6:71158200-71212400	Weak transcription	Fetal Brain Male	brain
4	chr6:71158400-71213600	Weak transcription	NHEK	skin
5	chr6:71158800-71212600	Weak transcription	Colonic Mucosa	Colon
6	chr6:71178000-71210400	Weak transcription	Lung	lung
7	chr6:71180400-71212600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:71181600-71213600	Weak transcription	HMEC	breast
9	chr6:71181600-71215800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:71183800-71216200	Weak transcription	Pancreas	Pancrea
11	chr6:71184000-71212800	Weak transcription	A549	lung
12	chr6:71184400-71210400	Weak transcription	Fetal Stomach	stomach
13	chr6:71184600-71210600	Weak transcription	Esophagus	oesophagus
14	chr6:71184600-71213400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:71185200-71213400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:71185800-71212600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:71185800-71212800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:71186000-71210400	Weak transcription	Aorta	Aorta
19	chr6:71187200-71212400	Weak transcription	Fetal Kidney	kidney
20	chr6:71187200-71212800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:71187400-71210800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:71187400-71211200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr6:71187400-71212400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr6:71187400-71212400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:71187400-71212600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:71187400-71212800	Weak transcription	Right Ventricle	heart
27	chr6:71187400-71218200	Weak transcription	Small Intestine	intestine
28	chr6:71187800-71211200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:71187800-71212400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:71188200-71212800	Weak transcription	HepG2	liver
31	chr6:71188400-71212200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr6:71189200-71212600	Weak transcription	Fetal Heart	heart
33	chr6:71189400-71210400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:71190000-71213400	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:71191200-71216000	Weak transcription	Gastric	stomach
36	chr6:71192000-71210800	Weak transcription	Adipose Nuclei	Adipose
37	chr6:71192000-71212400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:71192000-71212600	Weak transcription	Brain Angular Gyrus	brain
39	chr6:71193800-71212000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:71194000-71210400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:71194000-71212400	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr6:71194000-71213600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr6:71194600-71210600	Weak transcription	Ovary	ovary
44	chr6:71194600-71210800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:71194600-71210800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:71194600-71213200	Weak transcription	Primary T cells from cord blood	blood
47	chr6:71194600-71213600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:71195800-71210600	Weak transcription	Placenta	Placenta
49	chr6:71195800-71212400	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr6:71196000-71212200	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links