Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:46807555..46809670-chr6:24397817..24399756,2	K562	blood:
2	chr6:24398527..24401443-chr6:24402320..24404718,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124532	Chromatin interaction
ENSG00000117481	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1056283	0.84[ASN][1000 genomes]
rs1277343	0.81[ASN][1000 genomes]
rs1321819	0.85[ASN][1000 genomes]
rs13735	0.83[ASN][1000 genomes]
rs1772253	0.83[ASN][1000 genomes]
rs2753922	0.83[ASN][1000 genomes]
rs2793422	0.83[ASN][1000 genomes]
rs2876672	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3827640	0.82[ASN][1000 genomes]
rs6456612	0.80[ASN][1000 genomes]
rs6920147	0.84[ASN][1000 genomes]
rs7769012	0.84[ASN][1000 genomes]
rs793652	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs793654	0.83[ASN][1000 genomes]
rs793657	0.83[ASN][1000 genomes]
rs793679	0.82[ASN][1000 genomes]
rs793680	0.82[ASN][1000 genomes]
rs793682	0.82[ASN][1000 genomes]
rs793686	0.81[ASN][1000 genomes]
rs793687	0.81[ASN][1000 genomes]
rs793688	0.81[ASN][1000 genomes]
rs9393554	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24395200-24398800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:24396000-24401200	Weak transcription	Hela-S3	cervix
3	chr6:24397200-24398600	Weak transcription	Placenta	Placenta
4	chr6:24397600-24400000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:24397800-24399600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:24398400-24399600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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