Variant report

Variant	rs6936864
Chromosome Location	chr6:119788533-119788534
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2066352	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3934399	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7740612	0.84[ASN][1000 genomes]
rs7768648	0.86[ASN][1000 genomes]
rs7771697	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs924396	0.91[ASN][1000 genomes]
rs924397	0.91[ASN][1000 genomes]
rs9372538	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9398514	0.91[ASN][1000 genomes]
rs9401145	0.91[ASN][1000 genomes]
rs9401154	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119776200-119789200	Weak transcription	Fetal Heart	heart
2	chr6:119785200-119788600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:119788200-119788600	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr6:119788200-119788600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:119788400-119788600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:119788400-119788600	Enhancers	Liver	Liver
7	chr6:119788400-119788600	Enhancers	Right Atrium	heart
8	chr6:119788400-119788600	Flanking Active TSS	Dnd41	blood
9	chr6:119788400-119788600	Enhancers	K562	blood
10	chr6:119788400-119788800	Active TSS	Adipose Nuclei	Adipose
11	chr6:119788400-119788800	Enhancers	Ovary	ovary
12	chr6:119788400-119788800	Enhancers	NHDF-Ad	bronchial
13	chr6:119788400-119789000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:119788400-119789200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:119788400-119789200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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